GW-HIVE WIKI

2025-03-05T17:49:35Z

Emily.pennington: Added a description of the HIVE platform, links to tool demonstration videos, and a brief summary of the registration process.

== Welcome to HIVE ==
The HIVE platform is a cloud-based environment optimized for the storage and analysis of extra-large data, such as biomedical data, clinical data, next-generation sequencing (NGS) data, mass spectrometry files, and many others. HIVE provides secure web access for authorized users to deposit, retrieve, annotate and compute on Big Data, and to analyze the outcomes using web user interfaces.

There are currently several HIVE instances in both the public and private domains. The U.S. Food and Drug Administration (FDA) is home to two separate HIVE installations: the first is a rapid research and development environment that has been used by the Center for Biologics Evaluation Research (CBER) and other center scientists; the second FDA-HIVE is exclusively used for regulatory assessment of NGS data accompanying new submissions. The public domain of HIVE is supported by The George Washington University (GW) where any scientist around the world can access the resources through the web-portal, once they have registered for an account, and reviewed the HIVE best-practices document.

=== Tutorials and More ===
[https://hive.biochemistry.gwu.edu/dna.cgi?cmd=main-tutorials This page] describes all of the tools and software that HIVE supports. Additionally, we will work with you to create custom bioinformatic pipelines to suit your needs.

=== Registering for HIVE ===
Before you can take advantage of all that HIVE has to offer, you'll need to create and register your account. Due to limited resources at this time, access to HIVE is given on a case-by-case basis. After registering your account, the team will guide you through account activation. This process can be streamlined by completing the [https://docs.google.com/forms/d/1cjaQ1AT_nMHQ2stJmOQ0XesGqoXE0cgLNViTXjZtUJ8/edit HIVE access request form]. Your account will be ready to use after the account activation process is complete.

=== Request a Project ===
To request a project collaboration with HIVE, please follow [https://hive.biochemistry.gwu.edu/dna.cgi?cmd=projectRequest this link] and fill out the necessary information. We look forward to collaborating with you.

File:HIVE logo.png

2025-03-05T17:27:25Z

Emily.pennington:

This is the HIVE logo

Main Page

2025-01-14T17:59:32Z

Emily.pennington: Added FAQ section with directions to submit an access request form

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<div style="font-size:290%; padding:.1em; text-align: center;">[https://hivelab.biochemistry.gwu.edu/ Welcome] to the Mazumder Research Group (HIVE Lab) Wiki</div><br>
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<div style="font-size:100%;">The Mazumder Research Group (HIVE Lab) is involved in developing the High-performance Integrated Virtual Environment (HIVE) which is a collaborative project between the CBER Food and Drug Administration (FDA) and Dr. Raja Mazumder's team at The George Washington University (GW). In addition to the HIVE platform, the group is involved in developing standards for bioinformatics communication via BioCompute Objects, knowledgebases for glycoinformatics (GlyGen), cancer research (BiomarkerKB, OncoMX, BioMuta, BioXpress), and microbiome analysis via the GutFeeling Knowledge Base (GFKB). The lab leverages knowledge graphs and advanced ML/AI technologies, including large language models, to harmonize, map, and uncover valuable insights from clinical data, omics datasets, knowledgebases, and scientific publications.</div>The lab manages several social media accounts dedicated to various projects.<br>GlyGen: [https://www.linkedin.com/company/glygen/ LinkedIn], [https://mstdn.science/@glygen Mastadon]; [https://bsky.app/profile/glygen.bsky.social BlueSky] | BioCompute: [https://www.linkedin.com/company/biocompute-partnership LinkedIn] | GW Bioinfo & Biochem students and alumni: [https://www.linkedin.com/groups/8313079/ LinkedIn]<div style="font-size:100%;">This wiki system provides complementary information to the [https://hivelab.biochemistry.gwu.edu/ HIVE Lab] and is divided into the following main sections:</div>
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<h3>[[Projects]]</h3>
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    '''''Main article:''' [[Projects]]''<br>HIVE team projects fall into two major categories:<br>
1) Developing infrastructure for biomedical data analysis.<br>
2) Using that infrastructure to integrate and mine the data for knowledge.<br />
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<h3>[[Publications]]</h3>
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    '''''Main article:''' [[Publications]]''<br>The HIVE team has a variety of peer-reviewed publications, book chapters, posters, brochures, and multimedia available for the public.<br />
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<h3>[[People]]</h3>
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    '''''Main article:''' [[People]]''<br>This page contains details about the HIVE Lab team.<br />
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<h3>[[Contact]]</h3>
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    '''''Main article:''' [[Contact]]''<br>To contact us for more info. Please visit this page.
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=== FAQs ===

==== How can I access the HIVE platform? ====
At this time, we can only provide access to the HIVE platform to a limited number of researchers. If interested in using the HIVE platform, please tell us a little bit about your research needs and complete the [https://docs.google.com/forms/d/1cjaQ1AT_nMHQ2stJmOQ0XesGqoXE0cgLNViTXjZtUJ8/edit HIVE access request form]. Please wait to create an account until we have reviewed your research goals and are sure that we can support your research needs.

==== What do I do once I'm approved to use the HIVE platform? ====
If approved, please create an account. You will receive a confirmation email stating that your account was successfully created. Please verify your email by clicking the link included in the confirmation email.

==== What do I do if I created an account but did not receive a confirmation email? ====
Make sure you entered a valid email address. If you are sure that you used a valid email and have not received a confirmation email, please wait 24 hours and check again.

Be sure to fill out the HIVE access request form if you have not already done so. We can only grant access after ensuring that our platform can support your research needs.

==== Account activation ====
We can only activate you account once you have submitted the HIVE access request form and verified your email. If approved, please allow up to 24 hours for account activation. You will receive an email confirming that your account has been activated.

==== Requesting a demonstration ====
Once your account has been activated, someone from our team will contact you to schedule a 30 minute demonstration.

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=External links=

;Official

*[https://hivelab.biochemistry.gwu.edu/ HIVE Lab official website]

HIVE Lab - User contributions [en]

GW-HIVE WIKI

File:HIVE logo.png

Main Page