https://hivelab.biochemistry.gwu.edu/wiki/index.php?action=history&feed=atom&title=Final_Fields 2026-05-26T21:51:22Z Revision history for this page on the wiki MediaWiki 1.42.1 https://hivelab.biochemistry.gwu.edu/wiki/index.php?title=Final_Fields&diff=56&oldid=prev 2024-10-09T21:56:08Z

<p>Created page with &quot;=== Additional Notes === ==== Final fields ==== {| class=&quot;wikitable&quot; ! Field ! Description |- | sample_name | Sample ID provided by the original resource (for v-5.0 only applies to TCGA and COSMIC) |- | chr_id | Chromosome number only (no ‘chr’) |- | start_pos | Genomic coordinates (For v-5.0 these are all with ref GRCh38) |- | end_pos | Identical to the start position because all mutations are Specifications |- | ref_nt | Reference nucleotide |- | alt_nt | Nucleot...&quot;</p> <p><b>New page</b></p><div>=== Additional Notes ===<br /> <br /> ==== Final fields ====<br /> <br /> {| class=&quot;wikitable&quot;<br /> ! Field<br /> ! Description<br /> |-<br /> | sample_name<br /> | Sample ID provided by the original resource (for v-5.0 only applies to TCGA and COSMIC)<br /> |-<br /> | chr_id<br /> | Chromosome number only (no ‘chr’)<br /> |-<br /> | start_pos<br /> | Genomic coordinates (For v-5.0 these are all with ref GRCh38)<br /> |-<br /> | end_pos<br /> | Identical to the start position because all mutations are Specifications<br /> |-<br /> | ref_nt<br /> | Reference nucleotide<br /> |-<br /> | alt_nt<br /> | Nucleotide mutation<br /> |-<br /> | aa_pos<br /> | Amino acid number of the amino acid change in the human_protein_transcriptlocus<br /> |-<br /> | ref_aa<br /> | Reference amino acid<br /> |-<br /> | alt_aa<br /> | Amino acid variation caused by the mutation<br /> |-<br /> | do_name<br /> | DO parent term<br /> |-<br /> | uniprot_canonical_ac<br /> | Uniprot accession for the specific ENST or ENSP listed from the source<br /> |-<br /> | source<br /> | Original data source of the mutation<br /> |}</div>

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