GW-FEAST Data - Revision history

Lorikrammer: /* Additional Data Source Information */

2025-04-16T15:59:33Z

Additional Data Source Information

← Older revision		Revision as of 15:59, 16 April 2025
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	[[File:GW-FEAST Dataset Overview.png\|frameless\|722x722px]]		[[File:GW-FEAST Dataset Overview.png\|frameless\|722x722px]]

	== ~~Additional~~ Data ~~Source Information~~ ==		== Data Sources ==

	==== [[National Breast Cancer Coalition (NBCC) Data]] ====		==== [[National Breast Cancer Coalition (NBCC) Data]] ====

Lorikrammer: /* Additional Data Source Information */

2025-04-16T15:59:06Z

Additional Data Source Information

← Older revision		Revision as of 15:59, 16 April 2025
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	==== [[GW Data Commons (GWDC) Data]] ====		==== [[GW Data Commons (GWDC) Data]] ====

			==== [[Database of Genotypes and Phenotypes (dbGaP) Data]] ====

			==== [[Synthea Data]] ====

	== Data Access ==		== Data Access ==

Lorikrammer: /* Data Source Pages */

2025-04-16T15:57:49Z

Data Source Pages

← Older revision		Revision as of 15:57, 16 April 2025
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	[[File:GW-FEAST Dataset Overview.png\|frameless\|722x722px]]		[[File:GW-FEAST Dataset Overview.png\|frameless\|722x722px]]

	== Data Source ~~Pages~~ ==		== Additional Data Source Information ==

	==== [[National Breast Cancer Coalition (NBCC) Data]] ====		==== [[National Breast Cancer Coalition (NBCC) Data]] ====

Lorikrammer at 13:51, 20 March 2025

2025-03-20T13:51:03Z

← Older revision		Revision as of 13:51, 20 March 2025
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	<small>Go Back to the [[GW-FEAST\|GW-FEAST Home Page]].</small>		← <small>Go Back to the [[GW-FEAST\|GW-FEAST Home Page]].</small>

	The GW-FEAST Book of Data contains data types, access restrictions, and de-identification protocols for each data source of the GW-FEAST project. All datasets are comprehensively documented using BioCompute Objects (BCOs), an Institute for Electrical and Electronics Engineers (IEEE) standard currently in use at the United States (US) Food and Drug Administration. BCOs foster transparency and reproducibility in bioinformatics pipelines. All BCOs for the GW-FEAST project can be found on the [https://biocomputeobject.org/bcodbs BioCompute Portal].		The GW-FEAST Book of Data contains data types, access restrictions, and de-identification protocols for each data source of the GW-FEAST project. All datasets are comprehensively documented using BioCompute Objects (BCOs), an Institute for Electrical and Electronics Engineers (IEEE) standard currently in use at the United States (US) Food and Drug Administration. BCOs foster transparency and reproducibility in bioinformatics pipelines. All BCOs for the GW-FEAST project can be found on the [https://biocomputeobject.org/bcodbs BioCompute Portal].

Lorikrammer at 13:50, 20 March 2025

2025-03-20T13:50:27Z

← Older revision		Revision as of 13:50, 20 March 2025
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			<small>Go Back to the [[GW-FEAST\|GW-FEAST Home Page]].</small>

	The GW-FEAST Book of Data contains data types, access restrictions, and de-identification protocols for each data source of the GW-FEAST project. All datasets are comprehensively documented using BioCompute Objects (BCOs), an Institute for Electrical and Electronics Engineers (IEEE) standard currently in use at the United States (US) Food and Drug Administration. BCOs foster transparency and reproducibility in bioinformatics pipelines. All BCOs for the GW-FEAST project can be found on the [https://biocomputeobject.org/bcodbs BioCompute Portal].		The GW-FEAST Book of Data contains data types, access restrictions, and de-identification protocols for each data source of the GW-FEAST project. All datasets are comprehensively documented using BioCompute Objects (BCOs), an Institute for Electrical and Electronics Engineers (IEEE) standard currently in use at the United States (US) Food and Drug Administration. BCOs foster transparency and reproducibility in bioinformatics pipelines. All BCOs for the GW-FEAST project can be found on the [https://biocomputeobject.org/bcodbs BioCompute Portal].

Lorikrammer at 20:23, 13 March 2025

2025-03-13T20:23:09Z

← Older revision		Revision as of 20:23, 13 March 2025
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	~~== Data Sources ==~~
	The GW-FEAST Book of Data contains data types, access restrictions, and de-identification protocols for each data source of the GW-FEAST project. All datasets are comprehensively documented using BioCompute Objects (BCOs), an Institute for Electrical and Electronics Engineers (IEEE) standard currently in use at the United States (US) Food and Drug Administration. BCOs foster transparency and reproducibility in bioinformatics pipelines. All BCOs for the GW-FEAST project can be found on the [https://biocomputeobject.org/bcodbs BioCompute Portal].		The GW-FEAST Book of Data contains data types, access restrictions, and de-identification protocols for each data source of the GW-FEAST project. All datasets are comprehensively documented using BioCompute Objects (BCOs), an Institute for Electrical and Electronics Engineers (IEEE) standard currently in use at the United States (US) Food and Drug Administration. BCOs foster transparency and reproducibility in bioinformatics pipelines. All BCOs for the GW-FEAST project can be found on the [https://biocomputeobject.org/bcodbs BioCompute Portal].

	=== Overview of Current Data Sources for GW-FEAST ===		== Overview of Current Data Sources for GW-FEAST ==
	An overview of current data sources is shown below. The DNA and health record icons indicate whether the data type is -omics or electronic medical records (EMR) and the padlock icon is used to indicate which data sources are access-restricted. Greyed-out data sources are pending ingestion into the secure data environment for GW-FEAST.		An overview of current data sources is shown below. The DNA and health record icons indicate whether the data type is -omics or electronic medical records (EMR) and the padlock icon is used to indicate which data sources are access-restricted. Greyed-out data sources are pending ingestion into the secure data environment for GW-FEAST.

	[[File:GW-FEAST Dataset Overview.png\|frameless\|722x722px]]		[[File:GW-FEAST Dataset Overview.png\|frameless\|722x722px]]

	=== Data Source Pages ===		== Data Source Pages ==

	==== [[National Breast Cancer Coalition (NBCC) Data]] ====		==== [[National Breast Cancer Coalition (NBCC) Data]] ====
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	==== [[GW Data Commons (GWDC) Data]] ====		==== [[GW Data Commons (GWDC) Data]] ====

	=== Data Access ===		== Data Access ==

	==== [[GW-FEAST Data Access Portal]] ====		==== [[GW-FEAST Data Access Portal]] ====

Lorikrammer at 20:19, 13 March 2025

2025-03-13T20:19:45Z

← Older revision		Revision as of 20:19, 13 March 2025
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	[[File:GW-FEAST Dataset Overview.png\|frameless\|722x722px]]		[[File:GW-FEAST Dataset Overview.png\|frameless\|722x722px]]

	~~<br></br>~~
	=== Data Source Pages ===		=== Data Source Pages ===

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	==== [[GW Data Commons (GWDC) Data]] ====		==== [[GW Data Commons (GWDC) Data]] ====
	~~<br></br>~~
	=== Data Access ===		=== Data Access ===

Lorikrammer: Created page with "== Data Sources == The GW-FEAST Book of Data contains data types, access restrictions, and de-identification protocols for each data source of the GW-FEAST project. All datasets are comprehensively documented using BioCompute Objects (BCOs), an Institute for Electrical and Electronics Engineers (IEEE) standard currently in use at the United States (US) Food and Drug Administration. BCOs foster transparency and reproducibility in bioinformatics pipelines. All BCOs for the..."

2025-03-13T20:19:29Z

Created page with "== Data Sources == The GW-FEAST Book of Data contains data types, access restrictions, and de-identification protocols for each data source of the GW-FEAST project. All datasets are comprehensively documented using BioCompute Objects (BCOs), an Institute for Electrical and Electronics Engineers (IEEE) standard currently in use at the United States (US) Food and Drug Administration. BCOs foster transparency and reproducibility in bioinformatics pipelines. All BCOs for the..."

New page

== Data Sources ==
The GW-FEAST Book of Data contains data types, access restrictions, and de-identification protocols for each data source of the GW-FEAST project. All datasets are comprehensively documented using BioCompute Objects (BCOs), an Institute for Electrical and Electronics Engineers (IEEE) standard currently in use at the United States (US) Food and Drug Administration. BCOs foster transparency and reproducibility in bioinformatics pipelines. All BCOs for the GW-FEAST project can be found on the [https://biocomputeobject.org/bcodbs BioCompute Portal].

=== Overview of Current Data Sources for GW-FEAST ===
An overview of current data sources is shown below. The DNA and health record icons indicate whether the data type is -omics or electronic medical records (EMR) and the padlock icon is used to indicate which data sources are access-restricted. Greyed-out data sources are pending ingestion into the secure data environment for GW-FEAST.

[[File:GW-FEAST Dataset Overview.png|frameless|722x722px]]

<br></br>
=== Data Source Pages ===

==== [[National Breast Cancer Coalition (NBCC) Data]] ====

==== [[GW Data Commons (GWDC) Data]] ====
<br></br>
=== Data Access ===

==== [[GW-FEAST Data Access Portal]] ====
GW-FEAST data is access-controlled. To gain access please email mazumder_lab@gwu.edu.
For users who have access please connect to GW VPN and then go to the [https://feast.mgpc.biochemistry.gwu.edu/dsviewer '''data access portal'''] and log in.

==== [[GW-FEAST De-identified Data Templates]] ====
De-identified single-patient datasets are available for download.