PredictMod Frequently Asked Questions - Revision history

Lorikrammer: /* Who can register for a PredictMod account? */

2025-08-28T18:14:29Z

Who can register for a PredictMod account?

Lorikrammer: /* Can I view a history of my predictions? */

2025-07-10T14:37:16Z

Can I view a history of my predictions?

← Older revision		Revision as of 14:37, 10 July 2025
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	The data will not be saved in the system. PredictMod will use uploaded patient data to make a one-time prediction.		The data will not be saved in the system. PredictMod will use uploaded patient data to make a one-time prediction.

	==== ~~'''~~Can I view a history of my predictions?~~'''~~ ====		==== Can I view a history of my predictions? ====
	Prediction results are not saved, so a prediction history is not available.		Prediction results are not saved, so a prediction history is not available.

Lorikrammer: /* Who can register for a PredictMod account? */

2025-07-10T14:36:33Z

Who can register for a PredictMod account?

← Older revision		Revision as of 14:36, 10 July 2025
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	==== Who can register for a PredictMod account? ====		==== Who can register for a PredictMod account? ====
	Any clinicians, ~~and~~ researchers, or other individuals interested in using the tool are invited to register.		Any clinicians, researchers, or other individuals interested in using the tool are invited to register.

	==== How long does registration last? ====		==== How long does registration last? ====
	Registered accounts do not expire. You will be logged out after 24 hours of each login.		Registered accounts do not expire. You will be logged out after 24 hours of each login.

	~~==== Will the system store patient data? ====~~
	~~The data will not be saved in the system. PredictMod will use uploaded patient data to make a one-time prediction.~~

	~~==== Can I view a history of my predictions? ====~~
	~~Prediction results are not saved, so a prediction history is not available.~~

	== Query Builder ==		== Query Builder ==

	==== <strong>How can I run a prediction using a single-patient data file?</strong> ====		==== <strong>How can I run a prediction using a single-patient data file?</strong> ====
	Use the query builder to select the desired condition, intervention, and data type associated with your patient data. File upload templates vary by model. Reference our example files to ensure your data meets our formatting requirements. Select ~~‘Run Prediction’~~ to view the results.		Use the query builder to select the desired condition, intervention, and data type associated with your patient data. File upload templates vary by model. Reference our example files to ensure your data meets our formatting requirements. Select ‘Submit & Analyze’ to view the results. You can also run predictions by selecting a model from the ''Models'' page.

	==== What file types are accepted? ====		==== What file types are accepted? ====
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	==== How do I know if my file is not formatted correctly? ====		==== How do I know if my file is not formatted correctly? ====
	An incorrectly formatted file will return an error message when the '~~Run a Prediction~~' option is selected. If you receive a formatting error message and you are unsure why, please contact our team and we can work with you to resolve the issue.		An incorrectly formatted file will return an error message when the 'Submit & Analyze' option is selected. If you receive a formatting error message and you are unsure why, please contact our team and we can work with you to resolve the issue.

	''For additional assistance with uploading and formatting data, please contact our team.''		''For additional assistance with uploading and formatting data, please contact our team.''

	==== <strong>What data types are included in the PredictMod query selection?</strong> ====		==== <strong>What data types are included in the PredictMod query selection?</strong> ====
	~~The current~~ data types ~~are~~ metagenomic (MG), glycomic, glycoproteomic, and electronic medical record (EMR).		We have several data types such as metagenomic (MG), glycomic, glycoproteomic, time series, and electronic medical record (EMR). Additional data type information is available for each model on the platform.

	* <em>MG data</em> consist of the microbial composition of the gut microbiome typically displayed as a percent of abundance. This data is typically used within a research context to profile healthy gut microbiomes and to identify differential abundances and their associations to disease. Our MG Model is ~~trained on publicly~~ available ~~data. The reference genomes used~~ for ~~this~~ model are recorded in the Gut Feeling Knowledge Base (GFKB). Please use this list as a reference. Organisms not referenced in the GFKB can still be included in the input and receive an accurate model prediction. If you have any questions about this, please don’t hesitate to contact our team.
	* <em>EMR</em> consists of real-time patient-centered records that are utilized by physicians to streamline their workflow. It provides physicians the ability to view important medical details about their patients in order to provide improved patient care that is both efficient and safe. Our EMR models are trained on ~~data from~~ the ~~MDClone and Epic Cosmos~~.

	==== <strong>What conditions are included in the PredictMod query selection?</strong> ====		==== <strong>What conditions are included in the PredictMod query selection?</strong> ====
	~~The current~~ conditions ~~of interest are~~ prediabetes, epilepsy, and cancer. The platform is condition-agnostic and is designed to be used for a variety of conditions, interventions, and data types.		We have multiple conditions such as prediabetes, epilepsy, and cancer. The platform is condition-agnostic and is designed to be used for a variety of conditions, interventions, and data types. Additional condition information is available for each model on the platform.

	* <em>Prediabetes</em> is ~~a precursor to Type 2 Diabetes Mellitus (T2DM), where blood sugars are higher than normal, but not high enough to be considered T2DM. Prediction outcomes are based~~ on ~~a 5% reduction in weight, HOMA-IR, or a diagnosis of T2DM~~.

	==== <strong>What interventions are included in the PredictMod query selection?</strong> ====		==== <strong>What interventions are included in the PredictMod query selection?</strong> ====
	~~The current~~ interventions ~~are~~ exercise, ketogenic diet, and dietary counseling. ~~We also have a Semaglutide~~ intervention ~~coming soon~~.		We have multiple interventions such as exercise, ketogenic diet, medications, and dietary counseling. Additional intervention information is available for each model on the platform.

	==== <strong>What are the possible prediction outcomes?</strong> ====		==== <strong>What are the possible prediction outcomes?</strong> ====
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	==== <strong>Will the system store patient data?</strong> ====		==== <strong>Will the system store patient data?</strong> ====
	The data will not be saved in the system. PredictMod will use uploaded patient data to make a one-time prediction.		The data will not be saved in the system. PredictMod will use uploaded patient data to make a one-time prediction.

			==== '''Can I view a history of my predictions?''' ====
			Prediction results are not saved, so a prediction history is not available.

Lorikrammer: Created page with " Go Back to PredictMod Project. == Login & Registration == ==== Who can register for a PredictMod account? ==== Any clinicians, and researchers, or other individuals interested in using the tool are invited to register. ==== How long does registration last? ==== Registered accounts do not expire. You will be logged out after 24 hours of each login. ==== Will the system store patient data? ==== The data will not be saved in the system. Pr..."

2025-03-12T19:34:18Z

Created page with " Go Back to PredictMod Project. == Login & Registration == ==== Who can register for a PredictMod account? ==== Any clinicians, and researchers, or other individuals interested in using the tool are invited to register. ==== How long does registration last? ==== Registered accounts do not expire. You will be logged out after 24 hours of each login. ==== Will the system store patient data? ==== The data will not be saved in the system. Pr..."

New page

Go Back to [[PredictMod|PredictMod Project]]. 
== Login & Registration ==

==== Who can register for a PredictMod account? ====
Any clinicians, and researchers, or other individuals interested in using the tool are invited to register.

==== How long does registration last? ====
Registered accounts do not expire. You will be logged out after 24 hours of each login.

==== Will the system store patient data? ====
The data will not be saved in the system. PredictMod will use uploaded patient data to make a one-time prediction.

==== Can I view a history of my predictions? ====
Prediction results are not saved, so a prediction history is not available.

== Query Builder ==

==== How can I run a prediction using a single-patient data file? ====
Use the query builder to select the desired condition, intervention, and data type associated with your patient data. File upload templates vary by model. Reference our example files to ensure your data meets our formatting requirements. Select ‘Run Prediction’ to view the results.

==== What file types are accepted? ====
Comma separated values (csv) or excel workbook (xlsx) files are accepted.

==== How do I know if my file is not formatted correctly? ====
An incorrectly formatted file will return an error message when the 'Run a Prediction' option is selected. If you receive a formatting error message and you are unsure why, please contact our team and we can work with you to resolve the issue.

''For additional assistance with uploading and formatting data, please contact our team.''

==== What data types are included in the PredictMod query selection? ====
The current data types are metagenomic (MG), glycomic, glycoproteomic, and electronic medical record (EMR).

* MG data consist of the microbial composition of the gut microbiome typically displayed as a percent of abundance. This data is typically used within a research context to profile healthy gut microbiomes and to identify differential abundances and their associations to disease. Our MG Model is trained on publicly available data. The reference genomes used for this model are recorded in the Gut Feeling Knowledge Base (GFKB). Please use this list as a reference. Organisms not referenced in the GFKB can still be included in the input and receive an accurate model prediction. If you have any questions about this, please don’t hesitate to contact our team.
* EMR consists of real-time patient-centered records that are utilized by physicians to streamline their workflow. It provides physicians the ability to view important medical details about their patients in order to provide improved patient care that is both efficient and safe. Our EMR models are trained on data from the MDClone and Epic Cosmos.

==== What conditions are included in the PredictMod query selection? ====
The current conditions of interest are prediabetes, epilepsy, and cancer. The platform is condition-agnostic and is designed to be used for a variety of conditions, interventions, and data types.

* Prediabetes is a precursor to Type 2 Diabetes Mellitus (T2DM), where blood sugars are higher than normal, but not high enough to be considered T2DM. Prediction outcomes are based on a 5% reduction in weight, HOMA-IR, or a diagnosis of T2DM.

==== What interventions are included in the PredictMod query selection? ====
The current interventions are exercise, ketogenic diet, and dietary counseling. We also have a Semaglutide intervention coming soon.

==== What are the possible prediction outcomes? ====
PredictMod will provide a prediction categorized as either Responder or Non-Responder. The outcomes associated with the response status vary for each model, though a Responder result is generally associated with a positive health outcome, and the Non-Responder result is generally associated with a negative health outcome.

''For additional information, please review the [https://hivelab.biochemistry.gwu.edu/predictmod/models models] page on the portal.''

== Data & Security ==

==== Will the system store patient data? ====
The data will not be saved in the system. PredictMod will use uploaded patient data to make a one-time prediction.

← Older revision		Revision as of 18:14, 28 August 2025
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	==== Who can register for a PredictMod account? ====		==== Who can register for a PredictMod account? ====
	Any clinicians, researchers, or other individuals interested in using the tool are invited to register.		Any clinicians, researchers, or other individuals interested in using the tool are invited to register. Please see the [[PredictMod User Guide\|User Guide]] for more details.

	==== How long does registration last? ====		==== How long does registration last? ====
Line 11:		Line 11:

	==== <strong>How can I run a prediction using a single-patient data file?</strong> ====		==== <strong>How can I run a prediction using a single-patient data file?</strong> ====
	Use the query builder to select the desired condition, intervention, and data type associated with your patient data. File upload templates vary by model. Reference our example files to ensure your data meets our formatting requirements. Select ‘Submit & Analyze’ to view the results. You can also run predictions by selecting a model from the ''Models'' page.		Use the query builder to select the desired condition, intervention, and data type associated with your patient data. File upload templates vary by model. Reference our example files to ensure your data meets our formatting requirements. Select ‘Submit & Analyze’ to view the results. You can also run predictions by selecting a model from the ''Models'' page. Please see the [[PredictMod User Guide\|User Guide]] for more details.

	==== What file types are accepted? ====		==== What file types are accepted? ====
Line 17:		Line 17:

	==== How do I know if my file is not formatted correctly? ====		==== How do I know if my file is not formatted correctly? ====
	An incorrectly formatted file will return an error message when the 'Submit & Analyze' option is selected. If you receive a formatting error message and you are unsure why, please contact our team and we can work with you to resolve the issue.		An incorrectly formatted file will return an error message when the 'Submit & Analyze' option is selected. If you receive a formatting error message and you are unsure why, please contact our team and we can work with you to resolve the issue. Please see the [[PredictMod User Guide\|User Guide]] for more details.

	''For additional assistance with uploading and formatting data, please contact our team.''		''For additional assistance with uploading and formatting data, please contact our team.''
Line 31:		Line 31:

	==== <strong>What are the possible prediction outcomes?</strong> ====		==== <strong>What are the possible prediction outcomes?</strong> ====
	PredictMod will provide a prediction categorized as either <em>Responder</em> or <em>Non-Responder</em>. The outcomes associated with the response status vary for each model, though a <em>Responder</em> result is generally associated with a positive health outcome, and the <em>Non-Responder</em> result is generally associated with a negative health outcome.		PredictMod will provide a prediction categorized as either <em>Responder</em> or <em>Non-Responder</em>. The outcomes associated with the response status vary for each model, though a <em>Responder</em> result is generally associated with a positive health outcome, and the <em>Non-Responder</em> result is generally associated with a negative health outcome. Please see the [[PredictMod User Guide\|User Guide]] for more details.

	''For additional information, please review the [https://hivelab.biochemistry.gwu.edu/predictmod/models models] page on the portal.''		''For additional information, please review the [https://hivelab.biochemistry.gwu.edu/predictmod/models models] page on the portal.''