Projects - Revision history

Lorikrammer at 14:11, 14 April 2026

2026-04-14T14:11:42Z

← Older revision		Revision as of 14:11, 14 April 2026
Line 71:		Line 71:
	<div id="ggw-topbanner" style="clear:both; position:relative; box-sizing:border-box; width:100%; margin:1.2em 0 6px; min-width:47em; border:1px solid #ddd; background-color:#f5faff; color:#000;">		<div id="ggw-topbanner" style="clear:both; position:relative; box-sizing:border-box; width:100%; margin:1.2em 0 6px; min-width:47em; border:1px solid #ddd; background-color:#f5faff; color:#000;">
	<div style="margin:0.4em; text-align:center;">		<div style="margin:0.4em; text-align:center;">
	<div style="font-size:160%; padding:.1em;">Volunteership Semesters</div>		<div style="font-size:160%; padding:.1em;">Volunteership Semesters</div>[[Volunteership Summer 2026]]
	</div>
			[[Volunteership Spring 2026]]

			[[Volunteership Fall 2025]]

			[[Volunteership 2025\|Volunteership Summer 2025]]
			</div>
	</div>		</div>
	~~</div>~~
	{{DISPLAYTITLE:<span style="position: absolute; clip: rect(1px 1px 1px 1px); clip: rect(1px, 1px, 1px, 1px);">{{FULLPAGENAME}}</span>}}		{{DISPLAYTITLE:<span style="position: absolute; clip: rect(1px 1px 1px 1px); clip: rect(1px, 1px, 1px, 1px);">{{FULLPAGENAME}}</span>}}
	__NOTOC__		__NOTOC__

Lorikrammer at 14:08, 14 April 2026

2026-04-14T14:08:23Z

← Older revision		Revision as of 14:08, 14 April 2026
Line 66:		Line 66:
	[https://wiki.biomarkerkb.org/Main_Page BioMarkerKB WIKI]		[https://wiki.biomarkerkb.org/Main_Page BioMarkerKB WIKI]
	</div>		</div>
			</div>
			</div>
			<!-- BANNER ACROSS TOP OF PAGE -->
			<div id="ggw-topbanner" style="clear:both; position:relative; box-sizing:border-box; width:100%; margin:1.2em 0 6px; min-width:47em; border:1px solid #ddd; background-color:#f5faff; color:#000;">
			<div style="margin:0.4em; text-align:center;">
			<div style="font-size:160%; padding:.1em;">Volunteership Semesters</div>
			</div>
	</div>		</div>
	</div>		</div>
	{{DISPLAYTITLE:<span style="position: absolute; clip: rect(1px 1px 1px 1px); clip: rect(1px, 1px, 1px, 1px);">{{FULLPAGENAME}}</span>}}		{{DISPLAYTITLE:<span style="position: absolute; clip: rect(1px 1px 1px 1px); clip: rect(1px, 1px, 1px, 1px);">{{FULLPAGENAME}}</span>}}
	__NOTOC__		__NOTOC__

	<!-- BANNER ACROSS TOP OF PAGE -->		<!-- BANNER ACROSS TOP OF PAGE -->
	<div id="ggw-topbanner" style="clear:both; position:relative; box-sizing:border-box; width:100%; margin:1.2em 0 6px; min-width:47em; border:1px solid #ddd; background-color:#f9f9f9; color:#000;">		<div id="ggw-topbanner" style="clear:both; position:relative; box-sizing:border-box; width:100%; margin:1.2em 0 6px; min-width:47em; border:1px solid #ddd; background-color:#f9f9f9; color:#000;">

Jeetvora at 19:27, 23 October 2025

2025-10-23T19:27:21Z

← Older revision		Revision as of 19:27, 23 October 2025
Line 61:		Line 61:
	</div>		</div>
	<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">		<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
	<h3>[https://~~hivelab~~.~~biochemistry.gwu.edu~~/~~biomarker-partnership~~ Biomarker Knowledgebase]</h3>		<h3>[https://biomarkerkb.org/ Biomarker Knowledgebase]</h3>
	<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">		<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
	The Biomarker Partnership is a CFDE sponsored project to develop a knowledgebase that will organize and integrate biomarker data from different public sources. The data will be connected to contextual information to show a novel systems-level view of biomarkers. The motivation for this project is to improve the harmonization and organization of biomarker data. This will be done by mapping biomarkers from public sources to, and across, CF data elements. This mapping will bridge knowledge across multiple DCCs and biomedical disciplines.<br><br>		The Biomarker Partnership is a CFDE sponsored project to develop a knowledgebase that will organize and integrate biomarker data from different public sources. The data will be connected to contextual information to show a novel systems-level view of biomarkers. The motivation for this project is to improve the harmonization and organization of biomarker data. This will be done by mapping biomarkers from public sources to, and across, CF data elements. This mapping will bridge knowledge across multiple DCCs and biomedical disciplines.<br><br>

Christie.woodside at 19:21, 8 September 2025

2025-09-08T19:21:23Z

← Older revision		Revision as of 19:21, 8 September 2025
Line 24:		Line 24:
	</div>		</div>
	<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">		<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
	<h3>[https://argosdb.org/ FDA-ARGOS Project (Food and Drug Administration-dAtabase for Regulatory-Grade micrObial Sequences)]</h3>		<h3>[https://data.argosdb.org/ FDA-ARGOS Project (Food and Drug Administration-dAtabase for Regulatory-Grade micrObial Sequences)]</h3>
	<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">		<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
	The FDA-ARGOS Project (Food and Drug Administration-dAtabase for Regulatory-Grade micrObial Sequences) is a collaborative effort to create a high-quality genomic database for identifying and characterizing microbial pathogens. Developed in partnership with the FDA, University of Maryland, and NCBI, the project provides regulatory-grade genomic data, crucial for public health and diagnostic use. Expanded in 2021 with support from GWU, Temple University, and Embleema, FDA-ARGOS aims to enhance infectious disease research through rigorous quality control protocols. The ArgosDB hosts this data, offering downloadable sequences and reproducible workflows for research and regulatory applications.[https://www.fda.gov/medical-devices/science-and-research-medical-devices/database-reference-grade-microbial-sequences-fda-argos More here].<br><br>		The FDA-ARGOS Project (Food and Drug Administration-dAtabase for Regulatory-Grade micrObial Sequences) is a collaborative effort to create a high-quality genomic database for identifying and characterizing microbial pathogens. Developed in partnership with the FDA, University of Maryland, and NCBI, the project provides regulatory-grade genomic data, crucial for public health and diagnostic use. Expanded in 2021 with support from GWU, Temple University, and Embleema, FDA-ARGOS aims to enhance infectious disease research through rigorous quality control protocols. The ArgosDB hosts this data, offering downloadable sequences and reproducible workflows for research and regulatory applications.[https://www.fda.gov/medical-devices/science-and-research-medical-devices/database-reference-grade-microbial-sequences-fda-argos More here].<br><br>

Mazumder at 13:56, 29 August 2025

2025-08-29T13:56:00Z

← Older revision		Revision as of 13:56, 29 August 2025
Line 19:		Line 19:
	[[GW-HIVE WIKI]]		[[GW-HIVE WIKI]]

	METAGENOMICS WIKI		[[METAGENOMICS WIKI]]

	</div>		</div>

Mazumder at 13:55, 29 August 2025

2025-08-29T13:55:24Z

← Older revision		Revision as of 13:55, 29 August 2025
Line 14:		Line 14:
	<h3>[https://hive.biochemistry.gwu.edu/dna.cgi?cmd=main The High-performance Integrated Virtual Environment (HIVE) platform]</h3>		<h3>[https://hive.biochemistry.gwu.edu/dna.cgi?cmd=main The High-performance Integrated Virtual Environment (HIVE) platform]</h3>
	<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">		<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
	HIVE is a cloud-based environment optimized for the storage and analysis of extra-large data, such as biomedical data, clinical data, next-generation sequencing (NGS) data, mass spectrometry files, confocal microscopy images, post-market surveillance data, medical recall data, and many others. HIVE provides secure web access for authorized users to deposit, retrieve, annotate and compute on Big Data, and analyze the outcomes using web user interfaces. [https://docs.google.com/document/d/1F5iq00uKkJfdSsbwanvKOy-nPnwijH56mwbwa_HhzfY/edit?tab=t.0#heading=h.7dlfmngwfzih More here].<br><br>		HIVE is a cloud-based environment optimized for the storage and analysis of extra-large data, such as biomedical data, clinical data, next-generation sequencing (NGS) data, mass spectrometry files, confocal microscopy images, post-market surveillance data, medical recall data, and many others. HIVE provides secure web access for authorized users to deposit, retrieve, annotate and compute on Big Data, and analyze the outcomes using web user interfaces. [https://docs.google.com/document/d/1F5iq00uKkJfdSsbwanvKOy-nPnwijH56mwbwa_HhzfY/edit?tab=t.0#heading=h.7dlfmngwfzih More here].

			The HIVE platform and associated algorithms such as CensuScope and HIVE-Hexagon is used to support Metgenomics analysis infrastructure.<br><br>
	[[GW-HIVE WIKI]]		[[GW-HIVE WIKI]]
	</div>
			METAGENOMICS WIKI

			</div>
	</div>		</div>
	<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">		<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">

Maria.kim: Added to a sentence

2025-03-10T14:16:52Z

Added to a sentence

← Older revision		Revision as of 14:16, 10 March 2025
Line 91:		Line 91:
	<h3>[https://www.oncomx.org/ OncoMX]</h3>		<h3>[https://www.oncomx.org/ OncoMX]</h3>
	<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">		<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
	The OncoMX mission is to create an integrated cancer mutation and expression resource for exploring cancer biomarkers. OncoMX is a collaboration between the George Washington University (GW), NASA's Jet Propulsion Laboratory (JPL), the Swiss Institute of Bioinformatics (SIB), and the University of Delaware (UD). The core knowledgebase of OncoMX is derived from BioMuta and BioXpress integrated cancer mutation and expression databases. Normal expression data from Bgee and custom text mining software augment the cancer data to improve functional interpretation of the reported variants and expression profiles. All data are wrapped into the OncoMX database and web portal, mapped to additional functional information from NCI Early Detection Research Network (EDRN) and Reactome. It is expected that the large-scale integration of cancer data and supporting information, provided by OncoMX with direct community feedback, will benefit cancer research by improving synthesis of information and may make earlier detection a reality.		The OncoMX mission is to create an integrated cancer mutation and expression resource for exploring cancer biomarkers. OncoMX is a collaboration between the George Washington University (GW), NASA's Jet Propulsion Laboratory (JPL), the Swiss Institute of Bioinformatics (SIB), and the University of Delaware (UD). The core knowledgebase of OncoMX is derived from BioMuta and BioXpress integrated cancer mutation and expression databases which are actively maintained. Normal expression data from Bgee and custom text mining software augment the cancer data to improve functional interpretation of the reported variants and expression profiles. All data are wrapped into the OncoMX database and web portal, mapped to additional functional information from NCI Early Detection Research Network (EDRN) and Reactome. It is expected that the large-scale integration of cancer data and supporting information, provided by OncoMX with direct community feedback, will benefit cancer research by improving synthesis of information and may make earlier detection a reality.
	</div>		</div>
	</div>		</div>

Christie.woodside at 21:01, 28 February 2025

2025-02-28T21:01:48Z

← Older revision		Revision as of 21:01, 28 February 2025
Line 22:		Line 22:
	<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">		<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
	The FDA-ARGOS Project (Food and Drug Administration-dAtabase for Regulatory-Grade micrObial Sequences) is a collaborative effort to create a high-quality genomic database for identifying and characterizing microbial pathogens. Developed in partnership with the FDA, University of Maryland, and NCBI, the project provides regulatory-grade genomic data, crucial for public health and diagnostic use. Expanded in 2021 with support from GWU, Temple University, and Embleema, FDA-ARGOS aims to enhance infectious disease research through rigorous quality control protocols. The ArgosDB hosts this data, offering downloadable sequences and reproducible workflows for research and regulatory applications.[https://www.fda.gov/medical-devices/science-and-research-medical-devices/database-reference-grade-microbial-sequences-fda-argos More here].<br><br>		The FDA-ARGOS Project (Food and Drug Administration-dAtabase for Regulatory-Grade micrObial Sequences) is a collaborative effort to create a high-quality genomic database for identifying and characterizing microbial pathogens. Developed in partnership with the FDA, University of Maryland, and NCBI, the project provides regulatory-grade genomic data, crucial for public health and diagnostic use. Expanded in 2021 with support from GWU, Temple University, and Embleema, FDA-ARGOS aims to enhance infectious disease research through rigorous quality control protocols. The ArgosDB hosts this data, offering downloadable sequences and reproducible workflows for research and regulatory applications.[https://www.fda.gov/medical-devices/science-and-research-medical-devices/database-reference-grade-microbial-sequences-fda-argos More here].<br><br>
	[ FDA-ARGOS ~~Wiki~~]		[[FDA-ARGOS WIKI]]
	</div>		</div>
	</div>		</div>

Christie.woodside: changed name of the fda-argos section

2025-02-28T21:00:48Z

changed name of the fda-argos section

← Older revision		Revision as of 21:00, 28 February 2025
Line 19:		Line 19:
	</div>		</div>
	<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">		<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
	<h3>[https://argosdb.org/ FDA-ARGOS]</h3>		<h3>[https://argosdb.org/ FDA-ARGOS Project (Food and Drug Administration-dAtabase for Regulatory-Grade micrObial Sequences)]</h3>
	<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">		<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
	The FDA-ARGOS Project (Food and Drug Administration-dAtabase for Regulatory-Grade micrObial Sequences) is a collaborative effort to create a high-quality genomic database for identifying and characterizing microbial pathogens. Developed in partnership with the FDA, University of Maryland, and NCBI, the project provides regulatory-grade genomic data, crucial for public health and diagnostic use. Expanded in 2021 with support from GWU, Temple University, and Embleema, FDA-ARGOS aims to enhance infectious disease research through rigorous quality control protocols. The ArgosDB hosts this data, offering downloadable sequences and reproducible workflows for research and regulatory applications.[https://www.fda.gov/medical-devices/science-and-research-medical-devices/database-reference-grade-microbial-sequences-fda-argos More here].<br><br>		The FDA-ARGOS Project (Food and Drug Administration-dAtabase for Regulatory-Grade micrObial Sequences) is a collaborative effort to create a high-quality genomic database for identifying and characterizing microbial pathogens. Developed in partnership with the FDA, University of Maryland, and NCBI, the project provides regulatory-grade genomic data, crucial for public health and diagnostic use. Expanded in 2021 with support from GWU, Temple University, and Embleema, FDA-ARGOS aims to enhance infectious disease research through rigorous quality control protocols. The ArgosDB hosts this data, offering downloadable sequences and reproducible workflows for research and regulatory applications.[https://www.fda.gov/medical-devices/science-and-research-medical-devices/database-reference-grade-microbial-sequences-fda-argos More here].<br><br>

Christie.woodside: I added a new section for the FDA-ARGOS Project, because it was missing

2025-02-28T20:59:50Z

I added a new section for the FDA-ARGOS Project, because it was missing

← Older revision		Revision as of 20:59, 28 February 2025
Line 18:		Line 18:
	</div>		</div>
	</div>		</div>
			<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
			<h3>[https://argosdb.org/ FDA-ARGOS]</h3>
			<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
			The FDA-ARGOS Project (Food and Drug Administration-dAtabase for Regulatory-Grade micrObial Sequences) is a collaborative effort to create a high-quality genomic database for identifying and characterizing microbial pathogens. Developed in partnership with the FDA, University of Maryland, and NCBI, the project provides regulatory-grade genomic data, crucial for public health and diagnostic use. Expanded in 2021 with support from GWU, Temple University, and Embleema, FDA-ARGOS aims to enhance infectious disease research through rigorous quality control protocols. The ArgosDB hosts this data, offering downloadable sequences and reproducible workflows for research and regulatory applications.[https://www.fda.gov/medical-devices/science-and-research-medical-devices/database-reference-grade-microbial-sequences-fda-argos More here].<br><br>
			[ FDA-ARGOS Wiki]
			</div>
			</div>

	<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">		<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
	<h3>[https://www.biocomputeobject.org/ BioCompute Objects (BCO)]</h3>		<h3>[https://www.biocomputeobject.org/ BioCompute Objects (BCO)]</h3>