https://hivelab.biochemistry.gwu.edu/wiki/index.php?action=history&feed=atom&title=Publications
Publications - Revision history
2026-06-02T05:52:59Z
Revision history for this page on the wiki
MediaWiki 1.42.1
https://hivelab.biochemistry.gwu.edu/wiki/index.php?title=Publications&diff=1264&oldid=prev
Hivelabwikiadmin at 16:01, 7 May 2026
2026-05-07T16:01:09Z
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<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"> <li>Mazumder, R., Krammer, L., Vora, J. K., Au Yeung, C. C. H., Kim, M., Bhuiyan, U., Ranzinger, R., Woodside, C. R., Kamalabharathy, D., Kim, I., Gulati, V., Muthusekaran, V., Cognata, C., Chakravorty, S., Tien, A., & Bakshi, V. (2026, May 7). 2026 Spring Volunteership Symposium Presentations – Mazumder Lab, The George Washington University. Zenodo. <nowiki>https://doi.org/10.5281/zenodo.20072087</nowiki></li></ins></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Arethiya NJ, Krammer L, David J, Bakshi V, BasuChoudhary A, Bhuiyan U, Sen S, Mazumder R, McNeely P. Enhancing prediabetes diagnosis from continuous glucose monitoring data via iterative label cleaning and deep learning of Bridge2AI AI-READI data. medRxiv. 2026 Mar 4. Preprint. [https://www.medrxiv.org/content/10.64898/2026.03.04.26347604v1 DOI: 10.64898/2026.03.04.26347604].</li></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Arethiya NJ, Krammer L, David J, Bakshi V, BasuChoudhary A, Bhuiyan U, Sen S, Mazumder R, McNeely P. Enhancing prediabetes diagnosis from continuous glucose monitoring data via iterative label cleaning and deep learning of Bridge2AI AI-READI data. medRxiv. 2026 Mar 4. Preprint. [https://www.medrxiv.org/content/10.64898/2026.03.04.26347604v1 DOI: 10.64898/2026.03.04.26347604].</li></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Mazumder R, Keeney J, Johnson L, Krammer L, McNeely P, Sepulveda J, Hangen D, Martin M, Jyothi D, De Almeida J, McGarvey P, Alaoui A, Cha S, Sedrakyan A, Shoelle E, Matheny M, LeNoue-Newton M, Winter R, Deppen S, Simonyan V, Horvath A. From use cases to infrastructure: a cross-institutional survey of priorities in data-driven biomedical research. J Am Med Inform Assoc. 2026 Jan 20:ocag001. Epub ahead of print. [https://pubmed.ncbi.nlm.nih.gov/41556955/ PMID: 41556955].</li></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Mazumder R, Keeney J, Johnson L, Krammer L, McNeely P, Sepulveda J, Hangen D, Martin M, Jyothi D, De Almeida J, McGarvey P, Alaoui A, Cha S, Sedrakyan A, Shoelle E, Matheny M, LeNoue-Newton M, Winter R, Deppen S, Simonyan V, Horvath A. From use cases to infrastructure: a cross-institutional survey of priorities in data-driven biomedical research. J Am Med Inform Assoc. 2026 Jan 20:ocag001. Epub ahead of print. [https://pubmed.ncbi.nlm.nih.gov/41556955/ PMID: 41556955].</li></div></td></tr>
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Hivelabwikiadmin
https://hivelab.biochemistry.gwu.edu/wiki/index.php?title=Publications&diff=1171&oldid=prev
Lorikrammer at 13:53, 9 March 2026
2026-03-09T13:53:59Z
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><ul></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><ul></div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> <li>Krammer L, McNeely PM, Bhuiyan U, Singleton SS, Arethiya N, Argaw A, Aggarwal V, Basuchoudhary A, Mazumder M, David J, Agrawal S, Sen S, Mazumder R. PredictMod: A Platform for Predicting Medical Intervention Outcomes and Sharing Custom ML/AI Models. Network and Systems Medicine''.'' 2025. Vol. 1(1):57-66. [https://drugrepocentral.scienceopen.com/hosted-document?doi=10.14293/NSM.25.1.0007 DOI: 10.14293/NSM.25.1.0007]</li></div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"> <li>Arethiya NJ, Krammer L, David J, Bakshi V, BasuChoudhary A, Bhuiyan U, Sen S, Mazumder R, McNeely P. Enhancing prediabetes diagnosis from continuous glucose monitoring data via iterative label cleaning and deep learning of Bridge2AI AI-READI data. medRxiv. 2026 Mar 4. Preprint. [https://www.medrxiv.org/content/10.64898/2026.03.04.26347604v1 DOI: 10.64898/2026.03.04.26347604].</li></ins></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"> <li>Mazumder R, Keeney J, Johnson L, Krammer L, McNeely P, Sepulveda J, Hangen D, Martin M, Jyothi D, De Almeida J, McGarvey P, Alaoui A, Cha S, Sedrakyan A, Shoelle E, Matheny M, LeNoue-Newton M, Winter R, Deppen S, Simonyan V, Horvath A. From use cases to infrastructure: a cross-institutional survey of priorities in data-driven biomedical research. J Am Med Inform Assoc. 2026 Jan 20:ocag001. Epub ahead of print. [https://pubmed.ncbi.nlm.nih.gov/41556955/ PMID: 41556955].</li></ins></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> <li>Krammer L, McNeely PM, Bhuiyan U, Singleton SS, Arethiya N, Argaw A, Aggarwal V, Basuchoudhary A, Mazumder M, David J, Agrawal S, Sen S, Mazumder R. PredictMod: A Platform for Predicting Medical Intervention Outcomes and Sharing Custom ML/AI Models. Network and Systems Medicine''.'' 2025. Vol. 1(1):57-66. [https://drugrepocentral.scienceopen.com/hosted-document?doi=10.14293/NSM.25.1.0007 DOI: 10.14293/NSM.25.1.0007]<ins style="font-weight: bold; text-decoration: none;">.</ins></li></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Kahsay R, Bhuiyan U, Au CCH, Edwards N, Johnson L, Kulkarni S, Martinez K, Ranzinger R, Vijay-Shanker K, Vora J, Warner K, Tiemeyer M, Mazumder R. GlycoSiteMiner: an ML/AI-assisted literature mining-based pipeline for extracting glycosylation sites from PubMed abstracts. Glycobiology. 2025 May 22. [https://pubmed.ncbi.nlm.nih.gov/40401984/ PMID: 40401984].</li></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Kahsay R, Bhuiyan U, Au CCH, Edwards N, Johnson L, Kulkarni S, Martinez K, Ranzinger R, Vijay-Shanker K, Vora J, Warner K, Tiemeyer M, Mazumder R. GlycoSiteMiner: an ML/AI-assisted literature mining-based pipeline for extracting glycosylation sites from PubMed abstracts. Glycobiology. 2025 May 22. [https://pubmed.ncbi.nlm.nih.gov/40401984/ PMID: 40401984].</li></div></td></tr>
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Lorikrammer
https://hivelab.biochemistry.gwu.edu/wiki/index.php?title=Publications&diff=1074&oldid=prev
Rehmam at 14:58, 10 October 2025
2025-10-10T14:58:18Z
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 14:58, 10 October 2025</td>
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<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">All publications listed on this page should follow a modified National Library of Medicine (NLM) citation format, adapted for clarity and consistency. Here is the suggested format:<blockquote>''Author(s). Title of article. Journal Name. Year Month Day;Volume(Issue):Page range. PMID: [if available] DOI: [if no PMID]''</blockquote>Some guidelines:</ins></div></td></tr>
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Rehmam
https://hivelab.biochemistry.gwu.edu/wiki/index.php?title=Publications&diff=1073&oldid=prev
Mazumder at 17:46, 9 October 2025
2025-10-09T17:46:01Z
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<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> <li>Krammer L, McNeely <del style="font-weight: bold; text-decoration: none;">P</del>, <del style="font-weight: bold; text-decoration: none;">and </del>Bhuiyan U <del style="font-weight: bold; text-decoration: none;">et al</del>. PredictMod: A Platform for Predicting Medical Intervention Outcomes and Sharing Custom ML/AI Models. ''<del style="font-weight: bold; text-decoration: none;">NSM</del>.'' 2025. Vol. 1(1):57-66. [https://drugrepocentral.scienceopen.com/hosted-document?doi=10.14293/NSM.25.1.0007 DOI: 10.14293/NSM.25.1.0007]</li></div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> <li>Krammer L, McNeely <ins style="font-weight: bold; text-decoration: none;">PM</ins>, Bhuiyan U<ins style="font-weight: bold; text-decoration: none;">, Singleton SS, Arethiya N, Argaw A, Aggarwal V, Basuchoudhary A, Mazumder M, David J, Agrawal S, Sen S, Mazumder R</ins>. PredictMod: A Platform for Predicting Medical Intervention Outcomes and Sharing Custom ML/AI Models. <ins style="font-weight: bold; text-decoration: none;">Network and Systems Medicine</ins>''.'' 2025. Vol. 1(1):57-66. [https://drugrepocentral.scienceopen.com/hosted-document?doi=10.14293/NSM.25.1.0007 DOI: 10.14293/NSM.25.1.0007]</li></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Kahsay R, Bhuiyan U, Au CCH, Edwards N, Johnson L, Kulkarni S, Martinez K, Ranzinger R, Vijay-Shanker K, Vora J, Warner K, Tiemeyer M, Mazumder R. GlycoSiteMiner: an ML/AI-assisted literature mining-based pipeline for extracting glycosylation sites from PubMed abstracts. Glycobiology. 2025 May 22. [https://pubmed.ncbi.nlm.nih.gov/40401984/ PMID: 40401984].</li></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Kahsay R, Bhuiyan U, Au CCH, Edwards N, Johnson L, Kulkarni S, Martinez K, Ranzinger R, Vijay-Shanker K, Vora J, Warner K, Tiemeyer M, Mazumder R. GlycoSiteMiner: an ML/AI-assisted literature mining-based pipeline for extracting glycosylation sites from PubMed abstracts. Glycobiology. 2025 May 22. [https://pubmed.ncbi.nlm.nih.gov/40401984/ PMID: 40401984].</li></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Aoki-Kinoshita KF, Lisacek F, Mazumder R, Ranzinger R, Tiemeyer M, Yamada I, Packer NH. Meeting report of the GlySpace alliance and GaLSIC symposium. Glycobiology. 2025 Mar 28:cwaf019. [https://pubmed.ncbi.nlm.nih.gov/40156285/ PMID: 40156285].</li></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Aoki-Kinoshita KF, Lisacek F, Mazumder R, Ranzinger R, Tiemeyer M, Yamada I, Packer NH. Meeting report of the GlySpace alliance and GaLSIC symposium. Glycobiology. 2025 Mar 28:cwaf019. [https://pubmed.ncbi.nlm.nih.gov/40156285/ PMID: 40156285].</li></div></td></tr>
</table>
Mazumder
https://hivelab.biochemistry.gwu.edu/wiki/index.php?title=Publications&diff=1067&oldid=prev
Lorikrammer at 13:44, 2 October 2025
2025-10-02T13:44:39Z
<p></p>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><ul></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><ul></div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> <li><del style="font-weight: bold; text-decoration: none;">Lori </del>Krammer, <del style="font-weight: bold; text-decoration: none;">Patrick M. </del>McNeely and <del style="font-weight: bold; text-decoration: none;">Urnisha </del>Bhuiyan et al. PredictMod: A Platform for Predicting Medical Intervention Outcomes and Sharing Custom ML/AI Models. ''NSM.'' 2025. Vol. 1(1):57-66. [https://drugrepocentral.scienceopen.com/hosted-document?doi=10.14293/NSM.25.1.0007 DOI: 10.14293/NSM.25.1.0007]</li></div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> <li>Krammer <ins style="font-weight: bold; text-decoration: none;">L</ins>, McNeely <ins style="font-weight: bold; text-decoration: none;">P, </ins>and Bhuiyan <ins style="font-weight: bold; text-decoration: none;">U </ins>et al. PredictMod: A Platform for Predicting Medical Intervention Outcomes and Sharing Custom ML/AI Models. ''NSM.'' 2025. Vol. 1(1):57-66. [https://drugrepocentral.scienceopen.com/hosted-document?doi=10.14293/NSM.25.1.0007 DOI: 10.14293/NSM.25.1.0007]</li></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Kahsay R, Bhuiyan U, Au CCH, Edwards N, Johnson L, Kulkarni S, Martinez K, Ranzinger R, Vijay-Shanker K, Vora J, Warner K, Tiemeyer M, Mazumder R. GlycoSiteMiner: an ML/AI-assisted literature mining-based pipeline for extracting glycosylation sites from PubMed abstracts. Glycobiology. 2025 May 22. [https://pubmed.ncbi.nlm.nih.gov/40401984/ PMID: 40401984].</li></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Kahsay R, Bhuiyan U, Au CCH, Edwards N, Johnson L, Kulkarni S, Martinez K, Ranzinger R, Vijay-Shanker K, Vora J, Warner K, Tiemeyer M, Mazumder R. GlycoSiteMiner: an ML/AI-assisted literature mining-based pipeline for extracting glycosylation sites from PubMed abstracts. Glycobiology. 2025 May 22. [https://pubmed.ncbi.nlm.nih.gov/40401984/ PMID: 40401984].</li></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Aoki-Kinoshita KF, Lisacek F, Mazumder R, Ranzinger R, Tiemeyer M, Yamada I, Packer NH. Meeting report of the GlySpace alliance and GaLSIC symposium. Glycobiology. 2025 Mar 28:cwaf019. [https://pubmed.ncbi.nlm.nih.gov/40156285/ PMID: 40156285].</li></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Aoki-Kinoshita KF, Lisacek F, Mazumder R, Ranzinger R, Tiemeyer M, Yamada I, Packer NH. Meeting report of the GlySpace alliance and GaLSIC symposium. Glycobiology. 2025 Mar 28:cwaf019. [https://pubmed.ncbi.nlm.nih.gov/40156285/ PMID: 40156285].</li></div></td></tr>
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Lorikrammer
https://hivelab.biochemistry.gwu.edu/wiki/index.php?title=Publications&diff=1064&oldid=prev
Lorikrammer at 13:40, 2 October 2025
2025-10-02T13:40:47Z
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 13:40, 2 October 2025</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><ul></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><ul></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"> <li>Lori Krammer, Patrick M. McNeely and Urnisha Bhuiyan et al. PredictMod: A Platform for Predicting Medical Intervention Outcomes and Sharing Custom ML/AI Models. ''NSM.'' 2025. Vol. 1(1):57-66. [https://drugrepocentral.scienceopen.com/hosted-document?doi=10.14293/NSM.25.1.0007 DOI: 10.14293/NSM.25.1.0007]</li></ins></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Kahsay R, Bhuiyan U, Au CCH, Edwards N, Johnson L, Kulkarni S, Martinez K, Ranzinger R, Vijay-Shanker K, Vora J, Warner K, Tiemeyer M, Mazumder R. GlycoSiteMiner: an ML/AI-assisted literature mining-based pipeline for extracting glycosylation sites from PubMed abstracts. Glycobiology. 2025 May 22. [https://pubmed.ncbi.nlm.nih.gov/40401984/ PMID: 40401984].</li></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Kahsay R, Bhuiyan U, Au CCH, Edwards N, Johnson L, Kulkarni S, Martinez K, Ranzinger R, Vijay-Shanker K, Vora J, Warner K, Tiemeyer M, Mazumder R. GlycoSiteMiner: an ML/AI-assisted literature mining-based pipeline for extracting glycosylation sites from PubMed abstracts. Glycobiology. 2025 May 22. [https://pubmed.ncbi.nlm.nih.gov/40401984/ PMID: 40401984].</li></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Aoki-Kinoshita KF, Lisacek F, Mazumder R, Ranzinger R, Tiemeyer M, Yamada I, Packer NH. Meeting report of the GlySpace alliance and GaLSIC symposium. Glycobiology. 2025 Mar 28:cwaf019. [https://pubmed.ncbi.nlm.nih.gov/40156285/ PMID: 40156285].</li></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Aoki-Kinoshita KF, Lisacek F, Mazumder R, Ranzinger R, Tiemeyer M, Yamada I, Packer NH. Meeting report of the GlySpace alliance and GaLSIC symposium. Glycobiology. 2025 Mar 28:cwaf019. [https://pubmed.ncbi.nlm.nih.gov/40156285/ PMID: 40156285].</li></div></td></tr>
</table>
Lorikrammer
https://hivelab.biochemistry.gwu.edu/wiki/index.php?title=Publications&diff=847&oldid=prev
Mazumder at 15:35, 23 May 2025
2025-05-23T15:35:32Z
<p></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 15:35, 23 May 2025</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><ul></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><ul></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"> <li>Kahsay R, Bhuiyan U, Au CCH, Edwards N, Johnson L, Kulkarni S, Martinez K, Ranzinger R, Vijay-Shanker K, Vora J, Warner K, Tiemeyer M, Mazumder R. GlycoSiteMiner: an ML/AI-assisted literature mining-based pipeline for extracting glycosylation sites from PubMed abstracts. Glycobiology. 2025 May 22. [https://pubmed.ncbi.nlm.nih.gov/40401984/ PMID: 40401984].</li></ins></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Aoki-Kinoshita KF, Lisacek F, Mazumder R, Ranzinger R, Tiemeyer M, Yamada I, Packer NH. Meeting report of the GlySpace alliance and GaLSIC symposium. Glycobiology. 2025 Mar 28:cwaf019. [https://pubmed.ncbi.nlm.nih.gov/40156285/ PMID: 40156285].</li></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Aoki-Kinoshita KF, Lisacek F, Mazumder R, Ranzinger R, Tiemeyer M, Yamada I, Packer NH. Meeting report of the GlySpace alliance and GaLSIC symposium. Glycobiology. 2025 Mar 28:cwaf019. [https://pubmed.ncbi.nlm.nih.gov/40156285/ PMID: 40156285].</li></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Clarke DJB, Evangelista JE, Xie Z, Marino GB, Byrd AI, Maurya MR, Srinivasan S, Yu K, Petrosyan V, Roth ME, Milinkov M, King CH, Vora JK, Keeney J, Nemarich C, Khan W, Lachmann A, Ahmed N, Agris A, Pan J, Ramachandran S, Fahy E, Esquivel E, Mihajlovic A, Jevtic B, Milinovic V, Kim S, McNeely P, Wang T, Wenger E, Brown MA, Sickler A, Zhu Y, Jenkins SL, Blood PD, Taylor DM, Resnick AC, Mazumder R, Milosavljevic A, Subramaniam S, Ma'ayan A. Playbook workflow builder: Interactive construction of bioinformatics workflows. PLoS Comput Biol. 2025 Apr 3;21(4):e1012901. [https://pubmed.ncbi.nlm.nih.gov/40179105/ PMID: 40179105].</li></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Clarke DJB, Evangelista JE, Xie Z, Marino GB, Byrd AI, Maurya MR, Srinivasan S, Yu K, Petrosyan V, Roth ME, Milinkov M, King CH, Vora JK, Keeney J, Nemarich C, Khan W, Lachmann A, Ahmed N, Agris A, Pan J, Ramachandran S, Fahy E, Esquivel E, Mihajlovic A, Jevtic B, Milinovic V, Kim S, McNeely P, Wang T, Wenger E, Brown MA, Sickler A, Zhu Y, Jenkins SL, Blood PD, Taylor DM, Resnick AC, Mazumder R, Milosavljevic A, Subramaniam S, Ma'ayan A. Playbook workflow builder: Interactive construction of bioinformatics workflows. PLoS Comput Biol. 2025 Apr 3;21(4):e1012901. [https://pubmed.ncbi.nlm.nih.gov/40179105/ PMID: 40179105].</li></div></td></tr>
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Mazumder
https://hivelab.biochemistry.gwu.edu/wiki/index.php?title=Publications&diff=671&oldid=prev
Mazumder at 19:03, 4 April 2025
2025-04-04T19:03:16Z
<p></p>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Aoki-Kinoshita KF, Lisacek F, Mazumder R, Ranzinger R, Tiemeyer M, Yamada I, Packer NH. Meeting report of the GlySpace alliance and GaLSIC symposium. Glycobiology. 2025 Mar 28:cwaf019. [https://pubmed.ncbi.nlm.nih.gov/40156285/ PMID: 40156285].</li></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Aoki-Kinoshita KF, Lisacek F, Mazumder R, Ranzinger R, Tiemeyer M, Yamada I, Packer NH. Meeting report of the GlySpace alliance and GaLSIC symposium. Glycobiology. 2025 Mar 28:cwaf019. [https://pubmed.ncbi.nlm.nih.gov/40156285/ PMID: 40156285].</li></div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"> <li>Keeney ''et al''. Olduvai domain expression downregulates mitochondrial pathways: implications for human brain evolution and neoteny. October 22, 2024. https://doi.org/10.1101/2024.10.21.619278</li></del></div></td><td colspan="2" class="diff-side-added"></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Clarke DJB, Evangelista JE, Xie Z, Marino GB, Byrd AI, Maurya MR, Srinivasan S, Yu K, Petrosyan V, Roth ME, Milinkov M, King CH, Vora JK, Keeney J, Nemarich C, Khan W, Lachmann A, Ahmed N, Agris A, Pan J, Ramachandran S, Fahy E, Esquivel E, Mihajlovic A, Jevtic B, Milinovic V, Kim S, McNeely P, Wang T, Wenger E, Brown MA, Sickler A, Zhu Y, Jenkins SL, Blood PD, Taylor DM, Resnick AC, Mazumder R, Milosavljevic A, Subramaniam S, Ma'ayan A. Playbook workflow builder: Interactive construction of bioinformatics workflows. PLoS Comput Biol. 2025 Apr 3;21(4):e1012901. [https://pubmed.ncbi.nlm.nih.gov/40179105/ PMID: 40179105].</li></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Clarke DJB, Evangelista JE, Xie Z, Marino GB, Byrd AI, Maurya MR, Srinivasan S, Yu K, Petrosyan V, Roth ME, Milinkov M, King CH, Vora JK, Keeney J, Nemarich C, Khan W, Lachmann A, Ahmed N, Agris A, Pan J, Ramachandran S, Fahy E, Esquivel E, Mihajlovic A, Jevtic B, Milinovic V, Kim S, McNeely P, Wang T, Wenger E, Brown MA, Sickler A, Zhu Y, Jenkins SL, Blood PD, Taylor DM, Resnick AC, Mazumder R, Milosavljevic A, Subramaniam S, Ma'ayan A. Playbook workflow builder: Interactive construction of bioinformatics workflows. PLoS Comput Biol. 2025 Apr 3;21(4):e1012901. [https://pubmed.ncbi.nlm.nih.gov/40179105/ PMID: 40179105].</li></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"> <li>Keeney ''et al''. Olduvai domain expression downregulates mitochondrial pathways: implications for human brain evolution and neoteny. October 22, 2024. bioRxiv. https://doi.org/10.1101/2024.10.21.619278</li></ins></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Martinez K, Agirre J, Akune Y, Aoki-Kinoshita KF, Arighi C, Axelsen KB, Bolton E, Bordeleau E, Edwards NJ, Fadda E, Feizi T, Hayes C, Ives CM, Joshi HJ, Krishna Prasad K, Kossida S, Lisacek F, Liu Y, Lütteke T, Ma J, Malik A, Martin M, Mehta AY, Neelamegham S, Panneerselvam K, Ranzinger R, Ricard-Blum S, Sanou G, Shanker V, Thomas PD, Tiemeyer M, Urban J, Vita R, Vora J, Yamamoto Y, Mazumder R. Functional implications of glycans and their curation: insights from the workshop held at the 16th Annual International Biocuration Conference in Padua, Italy. Database (Oxford). 2024 Aug 13;2024:baae073. [https://pubmed.ncbi.nlm.nih.gov/39137905/ PMID: 39137905].</li></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Martinez K, Agirre J, Akune Y, Aoki-Kinoshita KF, Arighi C, Axelsen KB, Bolton E, Bordeleau E, Edwards NJ, Fadda E, Feizi T, Hayes C, Ives CM, Joshi HJ, Krishna Prasad K, Kossida S, Lisacek F, Liu Y, Lütteke T, Ma J, Malik A, Martin M, Mehta AY, Neelamegham S, Panneerselvam K, Ranzinger R, Ricard-Blum S, Sanou G, Shanker V, Thomas PD, Tiemeyer M, Urban J, Vita R, Vora J, Yamamoto Y, Mazumder R. Functional implications of glycans and their curation: insights from the workshop held at the 16th Annual International Biocuration Conference in Padua, Italy. Database (Oxford). 2024 Aug 13;2024:baae073. [https://pubmed.ncbi.nlm.nih.gov/39137905/ PMID: 39137905].</li></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Kim S, Mazumder R. Enhancing scientific reproducibility through automated BioCompute Object creation using Retrieval-Augmented Generation from publications. Computer Science, Computation and Language. https://doi.org/10.48550/arXiv.2409.15076</li></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Kim S, Mazumder R. Enhancing scientific reproducibility through automated BioCompute Object creation using Retrieval-Augmented Generation from publications. Computer Science, Computation and Language. https://doi.org/10.48550/arXiv.2409.15076</li></div></td></tr>
</table>
Mazumder
https://hivelab.biochemistry.gwu.edu/wiki/index.php?title=Publications&diff=670&oldid=prev
Mazumder at 19:01, 4 April 2025
2025-04-04T19:01:39Z
<p></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 19:01, 4 April 2025</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Aoki-Kinoshita KF, Lisacek F, Mazumder R, Ranzinger R, Tiemeyer M, Yamada I, Packer NH. Meeting report of the GlySpace alliance and GaLSIC symposium. Glycobiology. 2025 Mar 28:cwaf019. [https://pubmed.ncbi.nlm.nih.gov/40156285/ PMID: 40156285].</li></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Aoki-Kinoshita KF, Lisacek F, Mazumder R, Ranzinger R, Tiemeyer M, Yamada I, Packer NH. Meeting report of the GlySpace alliance and GaLSIC symposium. Glycobiology. 2025 Mar 28:cwaf019. [https://pubmed.ncbi.nlm.nih.gov/40156285/ PMID: 40156285].</li></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Keeney ''et al''. Olduvai domain expression downregulates mitochondrial pathways: implications for human brain evolution and neoteny. October 22, 2024. https://doi.org/10.1101/2024.10.21.619278</li></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Keeney ''et al''. Olduvai domain expression downregulates mitochondrial pathways: implications for human brain evolution and neoteny. October 22, 2024. https://doi.org/10.1101/2024.10.21.619278</li></div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> <li>Clarke '<del style="font-weight: bold; text-decoration: none;">'et al''</del>. Playbook <del style="font-weight: bold; text-decoration: none;">Workflow Builder</del>: Interactive <del style="font-weight: bold; text-decoration: none;">Construction </del>of <del style="font-weight: bold; text-decoration: none;">Bioinformatics Workflows from a Network of Microservices</del>. <del style="font-weight: bold; text-decoration: none;">June 09, 2024</del>. https://<del style="font-weight: bold; text-decoration: none;">doi</del>.<del style="font-weight: bold; text-decoration: none;">org/10</del>.<del style="font-weight: bold; text-decoration: none;">1101/2024</del>.<del style="font-weight: bold; text-decoration: none;">06</del>.<del style="font-weight: bold; text-decoration: none;">08</del>.<del style="font-weight: bold; text-decoration: none;">598037</del></li></div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> <li>Clarke <ins style="font-weight: bold; text-decoration: none;">DJB, Evangelista JE, Xie Z, Marino GB, Byrd AI, Maurya MR, Srinivasan S, Yu K, Petrosyan V, Roth ME, Milinkov M, King CH, Vora JK, Keeney J, Nemarich C, Khan W, Lachmann A, Ahmed N, Agris A, Pan J, Ramachandran S, Fahy E, Esquivel E, Mihajlovic A, Jevtic B, Milinovic V, Kim S, McNeely P, Wang T, Wenger E, Brown MA, Sickler A, Zhu Y, Jenkins SL, Blood PD, Taylor DM, Resnick AC, Mazumder R, Milosavljevic A, Subramaniam S, Ma</ins>'<ins style="font-weight: bold; text-decoration: none;">ayan A</ins>. Playbook <ins style="font-weight: bold; text-decoration: none;">workflow builder</ins>: Interactive <ins style="font-weight: bold; text-decoration: none;">construction </ins>of <ins style="font-weight: bold; text-decoration: none;">bioinformatics workflows. PLoS Comput Biol</ins>. <ins style="font-weight: bold; text-decoration: none;">2025 Apr 3;21(4):e1012901</ins>. <ins style="font-weight: bold; text-decoration: none;">[</ins>https://<ins style="font-weight: bold; text-decoration: none;">pubmed</ins>.<ins style="font-weight: bold; text-decoration: none;">ncbi</ins>.<ins style="font-weight: bold; text-decoration: none;">nlm</ins>.<ins style="font-weight: bold; text-decoration: none;">nih</ins>.<ins style="font-weight: bold; text-decoration: none;">gov/40179105/ PMID: 40179105]</ins>.</li></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Martinez K, Agirre J, Akune Y, Aoki-Kinoshita KF, Arighi C, Axelsen KB, Bolton E, Bordeleau E, Edwards NJ, Fadda E, Feizi T, Hayes C, Ives CM, Joshi HJ, Krishna Prasad K, Kossida S, Lisacek F, Liu Y, Lütteke T, Ma J, Malik A, Martin M, Mehta AY, Neelamegham S, Panneerselvam K, Ranzinger R, Ricard-Blum S, Sanou G, Shanker V, Thomas PD, Tiemeyer M, Urban J, Vita R, Vora J, Yamamoto Y, Mazumder R. Functional implications of glycans and their curation: insights from the workshop held at the 16th Annual International Biocuration Conference in Padua, Italy. Database (Oxford). 2024 Aug 13;2024:baae073. [https://pubmed.ncbi.nlm.nih.gov/39137905/ PMID: 39137905].</li></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Martinez K, Agirre J, Akune Y, Aoki-Kinoshita KF, Arighi C, Axelsen KB, Bolton E, Bordeleau E, Edwards NJ, Fadda E, Feizi T, Hayes C, Ives CM, Joshi HJ, Krishna Prasad K, Kossida S, Lisacek F, Liu Y, Lütteke T, Ma J, Malik A, Martin M, Mehta AY, Neelamegham S, Panneerselvam K, Ranzinger R, Ricard-Blum S, Sanou G, Shanker V, Thomas PD, Tiemeyer M, Urban J, Vita R, Vora J, Yamamoto Y, Mazumder R. Functional implications of glycans and their curation: insights from the workshop held at the 16th Annual International Biocuration Conference in Padua, Italy. Database (Oxford). 2024 Aug 13;2024:baae073. [https://pubmed.ncbi.nlm.nih.gov/39137905/ PMID: 39137905].</li></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Kim S, Mazumder R. Enhancing scientific reproducibility through automated BioCompute Object creation using Retrieval-Augmented Generation from publications. Computer Science, Computation and Language. https://doi.org/10.48550/arXiv.2409.15076</li></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Kim S, Mazumder R. Enhancing scientific reproducibility through automated BioCompute Object creation using Retrieval-Augmented Generation from publications. Computer Science, Computation and Language. https://doi.org/10.48550/arXiv.2409.15076</li></div></td></tr>
</table>
Mazumder
https://hivelab.biochemistry.gwu.edu/wiki/index.php?title=Publications&diff=621&oldid=prev
Mazumder at 18:37, 31 March 2025
2025-03-31T18:37:02Z
<p></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 18:37, 31 March 2025</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><h2>HIVE Team Publications</h2></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><h2>HIVE Team Publications</h2></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><ul></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><ul></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"> <li>Aoki-Kinoshita KF, Lisacek F, Mazumder R, Ranzinger R, Tiemeyer M, Yamada I, Packer NH. Meeting report of the GlySpace alliance and GaLSIC symposium. Glycobiology. 2025 Mar 28:cwaf019. [https://pubmed.ncbi.nlm.nih.gov/40156285/ PMID: 40156285].</li></ins></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Keeney ''et al''. Olduvai domain expression downregulates mitochondrial pathways: implications for human brain evolution and neoteny. October 22, 2024. https://doi.org/10.1101/2024.10.21.619278</li></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Keeney ''et al''. Olduvai domain expression downregulates mitochondrial pathways: implications for human brain evolution and neoteny. October 22, 2024. https://doi.org/10.1101/2024.10.21.619278</li></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Clarke ''et al''. Playbook Workflow Builder: Interactive Construction of Bioinformatics Workflows from a Network of Microservices. June 09, 2024. https://doi.org/10.1101/2024.06.08.598037</li></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <li>Clarke ''et al''. Playbook Workflow Builder: Interactive Construction of Bioinformatics Workflows from a Network of Microservices. June 09, 2024. https://doi.org/10.1101/2024.06.08.598037</li></div></td></tr>
</table>
Mazumder