Tool Resources - Revision history

Jeetvora at 20:21, 14 August 2025

2025-08-14T20:21:16Z

← Older revision		Revision as of 20:21, 14 August 2025
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	<li>[https://hivelab.tst.biochemistry.gwu.edu/tools FilteredNT]</li>		<li>[https://hivelab.tst.biochemistry.gwu.edu/tools FilteredNT]</li>
	<li>[https://www.oncomx.org/ OncoMX] - KB of unified cancer genomics data from integrated mutation, expression, literature, and biomarker databases, accessible through web portal</li>		<li>[https://www.oncomx.org/ OncoMX] - KB of unified cancer genomics data from integrated mutation, expression, literature, and biomarker databases, accessible through web portal</li>
	<li>[https://www.glygen.org/ GlyGen] - data integration and dissemination project for carbohydrate and glycoconjugate related data.<li>[https://biomarkerkb.org/ BiomarkerKB] - KB for organized and integrated biomarker data from different public sources with contextual information about ~~biomakers~~.		<li>[https://www.glygen.org/ GlyGen] - data integration and dissemination project for carbohydrate and glycoconjugate related data. (PMID: [https://www.ncbi.nlm.nih.gov/pubmed/31616925 31616925]; [https://www.ncbi.nlm.nih.gov/pubmed/32324859 32324859])<li>[https://biomarkerkb.org/ BiomarkerKB] - KB for organized and integrated biomarker data from different public sources with contextual information about biomarkers.

Jeetvora at 20:19, 14 August 2025

2025-08-14T20:19:12Z

← Older revision		Revision as of 20:19, 14 August 2025
Line 13:		Line 13:
	<li>[https://hivelab.tst.biochemistry.gwu.edu/tools FilteredNT]</li>		<li>[https://hivelab.tst.biochemistry.gwu.edu/tools FilteredNT]</li>
	<li>[https://www.oncomx.org/ OncoMX] - KB of unified cancer genomics data from integrated mutation, expression, literature, and biomarker databases, accessible through web portal</li>		<li>[https://www.oncomx.org/ OncoMX] - KB of unified cancer genomics data from integrated mutation, expression, literature, and biomarker databases, accessible through web portal</li>
	<li>[https://www.glygen.org/ GlyGen] - data integration and dissemination project for carbohydrate and glycoconjugate related data.		<li>[https://www.glygen.org/ GlyGen] - data integration and dissemination project for carbohydrate and glycoconjugate related data.<li>[https://biomarkerkb.org/ BiomarkerKB] - KB for organized and integrated biomarker data from different public sources with contextual information about biomakers.

Maria.kim: syntax

2025-01-21T18:04:54Z

syntax

← Older revision		Revision as of 18:04, 21 January 2025
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	<h2>Resources</h2>		<h2>Resources</h2>
	<li>[https://hivelab.tst.biochemistry.gwu.edu/biomuta_overview BioMuta] - browse human disease associated single-nucleotide variations (PMID: [https://pubmed.ncbi.nlm.nih.gov/24667251/ 24667251])</li>		<li>[https://hivelab.tst.biochemistry.gwu.edu/biomuta_overview BioMuta] - browse human disease associated single-nucleotide variations (PMID: [https://pubmed.ncbi.nlm.nih.gov/24667251/ 24667251])</li>
	<li>[https://hivelab.tst.biochemistry.gwu.edu/bioxpress_overview BioXpress] - is a curated gene expression and disease association database. (PMID: [https://pubmed.ncbi.nlm.nih.gov/25819073/ 25819073])</li>		<li>[https://hivelab.tst.biochemistry.gwu.edu/bioxpress_overview BioXpress] - a curated gene expression and disease association database. (PMID: [https://pubmed.ncbi.nlm.nih.gov/25819073/ 25819073])</li>
	<li>[https://hivelab.tst.biochemistry.gwu.edu/gfkb Gut Feeling Knowledge Base] - Gut feeling knowledgebase is a reference database of healthy human gut microbiome. (DOI:[https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0206484 10.1371/journal.pone.0206484])</li>		<li>[https://hivelab.tst.biochemistry.gwu.edu/gfkb Gut Feeling Knowledge Base] - Gut feeling knowledgebase is a reference database of healthy human gut microbiome. (DOI:[https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0206484 10.1371/journal.pone.0206484])</li>
	<li>[https://hivelab.tst.biochemistry.gwu.edu/tools FilteredNT]</li>		<li>[https://hivelab.tst.biochemistry.gwu.edu/tools FilteredNT]</li>
	<li>[https://www.oncomx.org/ OncoMX] - KB of unified cancer genomics data from integrated mutation, expression, literature, and biomarker databases, accessible through web portal</li>		<li>[https://www.oncomx.org/ OncoMX] - KB of unified cancer genomics data from integrated mutation, expression, literature, and biomarker databases, accessible through web portal</li>
	<li>[https://www.glygen.org/ GlyGen] - data integration and dissemination project for carbohydrate and glycoconjugate related data.		<li>[https://www.glygen.org/ GlyGen] - data integration and dissemination project for carbohydrate and glycoconjugate related data.

Vishal.bakshi at 16:55, 17 December 2024

2024-12-17T16:55:58Z

← Older revision		Revision as of 16:55, 17 December 2024
Line 6:		Line 6:
	<li>[https://hivelab.tst.biochemistry.gwu.edu/CensuScope CensuScope] - detect taxonomic composition of a metagenomic data set (PMID: [https://pubmed.ncbi.nlm.nih.gov/25336203 25336203])</li>		<li>[https://hivelab.tst.biochemistry.gwu.edu/CensuScope CensuScope] - detect taxonomic composition of a metagenomic data set (PMID: [https://pubmed.ncbi.nlm.nih.gov/25336203 25336203])</li>
	<li>[https://hivelab.biochemistry.gwu.edu/predictmod PredictMod] - A machine-learning-based platform for tools that predict patient-based clinical outcomes (PMID: [https://pubmed.ncbi.nlm.nih.gov/33814114 33814114])</li>		<li>[https://hivelab.biochemistry.gwu.edu/predictmod PredictMod] - A machine-learning-based platform for tools that predict patient-based clinical outcomes (PMID: [https://pubmed.ncbi.nlm.nih.gov/33814114 33814114])</li>

			<h2>Resources</h2>
			<li>[https://hivelab.tst.biochemistry.gwu.edu/biomuta_overview BioMuta] - browse human disease associated single-nucleotide variations (PMID: [https://pubmed.ncbi.nlm.nih.gov/24667251/ 24667251])</li>
			<li>[https://hivelab.tst.biochemistry.gwu.edu/bioxpress_overview BioXpress] - is a curated gene expression and disease association database. (PMID: [https://pubmed.ncbi.nlm.nih.gov/25819073/ 25819073])</li>
			<li>[https://hivelab.tst.biochemistry.gwu.edu/gfkb Gut Feeling Knowledge Base] - Gut feeling knowledgebase is a reference database of healthy human gut microbiome. (DOI:[https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0206484 10.1371/journal.pone.0206484])</li>
			<li>[https://hivelab.tst.biochemistry.gwu.edu/tools FilteredNT]</li>
			<li>[https://www.oncomx.org/ OncoMX] - KB of unified cancer genomics data from integrated mutation, expression, literature, and biomarker databases, accessible through web portal</li>
			<li>[https://www.glygen.org/ GlyGen] - data integration and dissemination project for carbohydrate and glycoconjugate related data.

Vishal.bakshi: Created page with "

Tools/Applications

[https://hive.biochemistry.gwu.edu/dna.cgi?cmd=main GW HIVE] - GW instance of the High-performance Integrated Virtual Environment (PMID: [https://pubmed.ncbi.nlm.nih.gov/25271953/ 25271953]; [https://pubmed.ncbi.nlm.nih.gov/26989153/ 26989153])

AWS HIVE - AWS instance of the High-performance Integrated Virtual Environment (PMID: [https://pubmed.ncbi.nlm.nih.gov/25271953/ 25271953]; [https://pubmed.ncbi.nlm.nih.gov/26989153/ 269891..."

2024-11-25T23:07:21Z

Created page with "<h2>Tools/Applications</h2> <li>[https://hive.biochemistry.gwu.edu/dna.cgi?cmd=main GW HIVE] - GW instance of the High-performance Integrated Virtual Environment (PMID: [https://pubmed.ncbi.nlm.nih.gov/25271953/ 25271953]; [https://pubmed.ncbi.nlm.nih.gov/26989153/ 26989153])</li> <li>AWS HIVE - AWS instance of the High-performance Integrated Virtual Environment (PMID: [https://pubmed.ncbi.nlm.nih.gov/25271953/ 25271953]; [https://pubmed.ncbi.nlm.nih.gov/26989153/ 269891..."

New page

<h2>Tools/Applications</h2>
<li>[https://hive.biochemistry.gwu.edu/dna.cgi?cmd=main GW HIVE] - GW instance of the High-performance Integrated Virtual Environment (PMID: [https://pubmed.ncbi.nlm.nih.gov/25271953/ 25271953]; [https://pubmed.ncbi.nlm.nih.gov/26989153/ 26989153])</li>
<li>AWS HIVE - AWS instance of the High-performance Integrated Virtual Environment (PMID: [https://pubmed.ncbi.nlm.nih.gov/25271953/ 25271953]; [https://pubmed.ncbi.nlm.nih.gov/26989153/ 26989153])</li>
<li>[https://www.biocomputeobject.org/ BioCompute Objects Portal (BCOP)] - Portal for making BioCompute objects</li>
<li>[https://www.biocomputeobject.org/ PhyloSNP] - generate phylogenetic trees from single-nucleotide variation data (PMID: [https://pubmed.ncbi.nlm.nih.gov/24930720 24930720])</li>
<li>[https://hivelab.tst.biochemistry.gwu.edu/CensuScope CensuScope] - detect taxonomic composition of a metagenomic data set (PMID: [https://pubmed.ncbi.nlm.nih.gov/25336203 25336203])</li>
<li>[https://hivelab.biochemistry.gwu.edu/predictmod PredictMod] - A machine-learning-based platform for tools that predict patient-based clinical outcomes (PMID: [https://pubmed.ncbi.nlm.nih.gov/33814114 33814114])</li>