Additional ARGOS Reviewed Organisms: Difference between revisions
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This page highlights organisms that were reviewed and added to ARGOSDB that are external | Back to the [[FDA-ARGOS WIKI|Home Page]] for FDA-ARGOS | ||
This page highlights organisms that were selected, reviewed, and added to ARGOSDB that are external to the FDA-ARGOS BioProject PRJNA231221. The QC and metadata information for these organisms can be found in these tables on data.argosdb.org: | |||
- assemblyQC_ARGOS | |||
- biosampleMeta_ARGOS | |||
- ngsQC_ARGOS | |||
==Organism List== | |||
The organisms listed below can also be found on the [https://data.argosdb.org/ARGOS_000018 ngs_id_list.tsv table] on data.argosdb.org. | |||
'''Organisms that have been QC'd and reviewed:''' | |||
- Influenza A (H3N2) 2022 | |||
- Influenza A (H1N1) 2022 | |||
- Influenza A (Puerto Rico H1N1) reference genome | |||
- Monkeypox Virus (WRAIR 761) | |||
- Monkeypox Virus (USA2003( | |||
- Human immunodeficiency virus type 1 | |||
- Orthomarburgvirus marburgense (isolate Ravn virus/H.sapiens-tc/KEN/1987/Kitum Cave-810040) | |||
- Lake Victoria marburgvirus (Angola2005 strain Ang1379c) | |||
- Marburg virus (Musoke Kenya 1980 for SAMN11077998) | |||
- Marburg virus (Musoke Kenya 1980 for SAMN16357613) | |||
- Lake Victoria marburgvirus (Ci67) | |||
- Sudan ebolavirus (Gulu) | |||
- Severe acute respiratory syndrome coronavirus 2 (Omicron/XBB.1.5 SARS-CoV-2/human/USA/CA-CDC-STM-S85G6U7MH/2023) | |||
- Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2/human/USA/WA-CDC-02982586-001/2020) | |||
- Severe acute respiratory syndrome coronavirus 2 (isolate Wuhan-Hu-1) | |||
- Candidozyma auris | |||
'''Organisms that were selected, but have not been QC'd due to missing data information:''' | |||
- Middle East respiratory syndrome related coronavirus (EMC/2012) | |||
- Middle East respiratory syndrome related coronavirus (VR-3248SD) | |||
- Middle East respiratory syndrome related coronavirus (IRF0021 MERS JOR) | |||
- Middle East respiratory syndrome related coronavirus (IRF0038 MERS EMC) | |||
- Severe acute respiratory syndrome coronavirus 2 (Delta/B.1.617.2) | |||
- Severe acute respiratory syndrome coronavirus 2 (Omicron/B.1.1.529) | |||
- Severe acute respiratory syndrome coronavirus 2 (Beta/B.1.351) | |||
- Severe acute respiratory syndrome coronavirus 2 (Alpha/B.1.1.7) | |||
- Severe acute respiratory syndrome coronavirus 2 (Gamma/P.1) | |||
Latest revision as of 16:15, 5 June 2025
Back to the Home Page for FDA-ARGOS
This page highlights organisms that were selected, reviewed, and added to ARGOSDB that are external to the FDA-ARGOS BioProject PRJNA231221. The QC and metadata information for these organisms can be found in these tables on data.argosdb.org:
- assemblyQC_ARGOS
- biosampleMeta_ARGOS
- ngsQC_ARGOS
Organism List
The organisms listed below can also be found on the ngs_id_list.tsv table on data.argosdb.org.
Organisms that have been QC'd and reviewed:
- Influenza A (H3N2) 2022
- Influenza A (H1N1) 2022
- Influenza A (Puerto Rico H1N1) reference genome
- Monkeypox Virus (WRAIR 761)
- Monkeypox Virus (USA2003(
- Human immunodeficiency virus type 1
- Orthomarburgvirus marburgense (isolate Ravn virus/H.sapiens-tc/KEN/1987/Kitum Cave-810040)
- Lake Victoria marburgvirus (Angola2005 strain Ang1379c)
- Marburg virus (Musoke Kenya 1980 for SAMN11077998)
- Marburg virus (Musoke Kenya 1980 for SAMN16357613)
- Lake Victoria marburgvirus (Ci67)
- Sudan ebolavirus (Gulu)
- Severe acute respiratory syndrome coronavirus 2 (Omicron/XBB.1.5 SARS-CoV-2/human/USA/CA-CDC-STM-S85G6U7MH/2023)
- Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2/human/USA/WA-CDC-02982586-001/2020)
- Severe acute respiratory syndrome coronavirus 2 (isolate Wuhan-Hu-1)
- Candidozyma auris
Organisms that were selected, but have not been QC'd due to missing data information:
- Middle East respiratory syndrome related coronavirus (EMC/2012)
- Middle East respiratory syndrome related coronavirus (VR-3248SD)
- Middle East respiratory syndrome related coronavirus (IRF0021 MERS JOR)
- Middle East respiratory syndrome related coronavirus (IRF0038 MERS EMC)
- Severe acute respiratory syndrome coronavirus 2 (Delta/B.1.617.2)
- Severe acute respiratory syndrome coronavirus 2 (Omicron/B.1.1.529)
- Severe acute respiratory syndrome coronavirus 2 (Beta/B.1.351)
- Severe acute respiratory syndrome coronavirus 2 (Alpha/B.1.1.7)
- Severe acute respiratory syndrome coronavirus 2 (Gamma/P.1)