Tool Resources: Difference between revisions

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Created page with "<h2>Tools/Applications</h2> <li>[https://hive.biochemistry.gwu.edu/dna.cgi?cmd=main GW HIVE] - GW instance of the High-performance Integrated Virtual Environment (PMID: [https://pubmed.ncbi.nlm.nih.gov/25271953/ 25271953]; [https://pubmed.ncbi.nlm.nih.gov/26989153/ 26989153])</li> <li>AWS HIVE - AWS instance of the High-performance Integrated Virtual Environment (PMID: [https://pubmed.ncbi.nlm.nih.gov/25271953/ 25271953]; [https://pubmed.ncbi.nlm.nih.gov/26989153/ 269891..."
 
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<li>[https://hivelab.tst.biochemistry.gwu.edu/CensuScope CensuScope] - detect taxonomic composition of a metagenomic data set (PMID: [https://pubmed.ncbi.nlm.nih.gov/25336203 25336203])</li>
<li>[https://hivelab.tst.biochemistry.gwu.edu/CensuScope CensuScope] - detect taxonomic composition of a metagenomic data set (PMID: [https://pubmed.ncbi.nlm.nih.gov/25336203 25336203])</li>
<li>[https://hivelab.biochemistry.gwu.edu/predictmod PredictMod] - A machine-learning-based platform for tools that predict patient-based clinical outcomes (PMID: [https://pubmed.ncbi.nlm.nih.gov/33814114 33814114])</li>
<li>[https://hivelab.biochemistry.gwu.edu/predictmod PredictMod] - A machine-learning-based platform for tools that predict patient-based clinical outcomes (PMID: [https://pubmed.ncbi.nlm.nih.gov/33814114 33814114])</li>
<h2>Resources</h2>
<li>[https://hivelab.tst.biochemistry.gwu.edu/biomuta_overview BioMuta] - browse human disease associated single-nucleotide variations (PMID: [https://pubmed.ncbi.nlm.nih.gov/24667251/ 24667251])</li>
<li>[https://hivelab.tst.biochemistry.gwu.edu/bioxpress_overview BioXpress] - is a curated gene expression and disease association database. (PMID: [https://pubmed.ncbi.nlm.nih.gov/25819073/ 25819073])</li>
<li>[https://hivelab.tst.biochemistry.gwu.edu/gfkb Gut Feeling Knowledge Base] - Gut feeling knowledgebase is a reference database of healthy human gut microbiome. (DOI:[https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0206484 10.1371/journal.pone.0206484])</li>
<li>[https://hivelab.tst.biochemistry.gwu.edu/tools FilteredNT]</li>
<li>[https://www.oncomx.org/ OncoMX] - KB of unified cancer genomics data from integrated mutation, expression, literature, and biomarker databases, accessible through web portal</li>
<li>[https://www.glygen.org/ GlyGen] - data integration and dissemination project for carbohydrate and glycoconjugate related data.

Revision as of 16:55, 17 December 2024

Tools/Applications

  • GW HIVE - GW instance of the High-performance Integrated Virtual Environment (PMID: 25271953; 26989153)
  • AWS HIVE - AWS instance of the High-performance Integrated Virtual Environment (PMID: 25271953; 26989153)
  • BioCompute Objects Portal (BCOP) - Portal for making BioCompute objects
  • PhyloSNP - generate phylogenetic trees from single-nucleotide variation data (PMID: 24930720)
  • CensuScope - detect taxonomic composition of a metagenomic data set (PMID: 25336203)
  • PredictMod - A machine-learning-based platform for tools that predict patient-based clinical outcomes (PMID: 33814114)

    • Resources

  • BioMuta - browse human disease associated single-nucleotide variations (PMID: 24667251)
  • BioXpress - is a curated gene expression and disease association database. (PMID: 25819073)
  • Gut Feeling Knowledge Base - Gut feeling knowledgebase is a reference database of healthy human gut microbiome. (DOI:10.1371/journal.pone.0206484)
  • FilteredNT
  • OncoMX - KB of unified cancer genomics data from integrated mutation, expression, literature, and biomarker databases, accessible through web portal
  • GlyGen - data integration and dissemination project for carbohydrate and glycoconjugate related data.
    • Retrieved from "https://hivelab.biochemistry.gwu.edu/wiki/index.php?title=Tool_Resources&oldid=251"