Tool Resources: Difference between revisions

Latest revision as of 20:21, 14 August 2025

GW HIVE - GW instance of the High-performance Integrated Virtual Environment (PMID: 25271953; 26989153)

AWS HIVE - AWS instance of the High-performance Integrated Virtual Environment (PMID: 25271953; 26989153)

BioCompute Objects Portal (BCOP) - Portal for making BioCompute objects

PhyloSNP - generate phylogenetic trees from single-nucleotide variation data (PMID: 24930720)

CensuScope - detect taxonomic composition of a metagenomic data set (PMID: 25336203)

PredictMod - A machine-learning-based platform for tools that predict patient-based clinical outcomes (PMID: 33814114)

BioMuta - browse human disease associated single-nucleotide variations (PMID: 24667251)

BioXpress - a curated gene expression and disease association database. (PMID: 25819073)

Gut Feeling Knowledge Base - Gut feeling knowledgebase is a reference database of healthy human gut microbiome. (DOI:10.1371/journal.pone.0206484)

OncoMX - KB of unified cancer genomics data from integrated mutation, expression, literature, and biomarker databases, accessible through web portal

GlyGen - data integration and dissemination project for carbohydrate and glycoconjugate related data. (PMID: 31616925; 32324859)

BiomarkerKB - KB for organized and integrated biomarker data from different public sources with contextual information about biomarkers.

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 <li>[https://hivelab.tst.biochemistry.gwu.edu/tools FilteredNT]</li>
 <li>[https://www.oncomx.org/ OncoMX] - KB of unified cancer genomics data from integrated mutation, expression, literature, and biomarker databases, accessible through web portal</li>
-<li>[https://www.glygen.org/ GlyGen] - data integration and dissemination project for carbohydrate and glycoconjugate related data.<li>[https://biomarkerkb.org/ BiomarkerKB] - KB for organized and integrated biomarker data from different public sources with contextual information about biomakers.
+<li>[https://www.glygen.org/ GlyGen] - data integration and dissemination project for carbohydrate and glycoconjugate related data. (PMID: [https://www.ncbi.nlm.nih.gov/pubmed/31616925 31616925]; [https://www.ncbi.nlm.nih.gov/pubmed/32324859 32324859])<li>[https://biomarkerkb.org/ BiomarkerKB] - KB for organized and integrated biomarker data from different public sources with contextual information about biomarkers.