GW-FEAST Data: Difference between revisions
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The GW-FEAST Book of Data contains data types, access restrictions, and de-identification protocols for each data source of the GW-FEAST project. All datasets are comprehensively documented using BioCompute Objects (BCOs), an Institute for Electrical and Electronics Engineers (IEEE) standard currently in use at the United States (US) Food and Drug Administration. BCOs foster transparency and reproducibility in bioinformatics pipelines. All BCOs for the GW-FEAST project can be found on the [https://biocomputeobject.org/bcodbs BioCompute Portal]. | The GW-FEAST Book of Data contains data types, access restrictions, and de-identification protocols for each data source of the GW-FEAST project. All datasets are comprehensively documented using BioCompute Objects (BCOs), an Institute for Electrical and Electronics Engineers (IEEE) standard currently in use at the United States (US) Food and Drug Administration. BCOs foster transparency and reproducibility in bioinformatics pipelines. All BCOs for the GW-FEAST project can be found on the [https://biocomputeobject.org/bcodbs BioCompute Portal]. | ||
== Overview of Current Data Sources for GW-FEAST == | |||
An overview of current data sources is shown below. The DNA and health record icons indicate whether the data type is -omics or electronic medical records (EMR) and the padlock icon is used to indicate which data sources are access-restricted. Greyed-out data sources are pending ingestion into the secure data environment for GW-FEAST. | An overview of current data sources is shown below. The DNA and health record icons indicate whether the data type is -omics or electronic medical records (EMR) and the padlock icon is used to indicate which data sources are access-restricted. Greyed-out data sources are pending ingestion into the secure data environment for GW-FEAST. | ||
[[File:GW-FEAST Dataset Overview.png|frameless|722x722px]] | [[File:GW-FEAST Dataset Overview.png|frameless|722x722px]] | ||
== Data Source Pages == | |||
==== [[National Breast Cancer Coalition (NBCC) Data]] ==== | ==== [[National Breast Cancer Coalition (NBCC) Data]] ==== | ||
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==== [[GW Data Commons (GWDC) Data]] ==== | ==== [[GW Data Commons (GWDC) Data]] ==== | ||
== Data Access == | |||
==== [[GW-FEAST Data Access Portal]] ==== | ==== [[GW-FEAST Data Access Portal]] ==== | ||
Latest revision as of 20:23, 13 March 2025
The GW-FEAST Book of Data contains data types, access restrictions, and de-identification protocols for each data source of the GW-FEAST project. All datasets are comprehensively documented using BioCompute Objects (BCOs), an Institute for Electrical and Electronics Engineers (IEEE) standard currently in use at the United States (US) Food and Drug Administration. BCOs foster transparency and reproducibility in bioinformatics pipelines. All BCOs for the GW-FEAST project can be found on the BioCompute Portal.
Overview of Current Data Sources for GW-FEAST
An overview of current data sources is shown below. The DNA and health record icons indicate whether the data type is -omics or electronic medical records (EMR) and the padlock icon is used to indicate which data sources are access-restricted. Greyed-out data sources are pending ingestion into the secure data environment for GW-FEAST.
Data Source Pages
National Breast Cancer Coalition (NBCC) Data
GW Data Commons (GWDC) Data
Data Access
GW-FEAST Data Access Portal
GW-FEAST data is access-controlled. To gain access please email mazumder_lab@gwu.edu. For users who have access please connect to GW VPN and then go to the data access portal and log in.
GW-FEAST De-identified Data Templates
De-identified single-patient datasets are available for download.