User contributions for Hivelabwikiadmin
A user with 116 edits. Account created on 25 September 2024.
9 October 2024
- 21:5321:53, 9 October 2024 diff hist +935 BioMuta pipeline README →Step 3: Combine
- 21:5021:50, 9 October 2024 diff hist −830 Additional Notes →Additional Notes current
- 21:4721:47, 9 October 2024 diff hist +1,085 BioMuta pipeline README →Usage
- 21:4321:43, 9 October 2024 diff hist +22 BioMuta pipeline README →Usage
- 21:4221:42, 9 October 2024 diff hist −15 BioMuta pipeline README →Other files used
- 21:3921:39, 9 October 2024 diff hist −8 BioMuta pipeline README →Requirements
- 21:3721:37, 9 October 2024 diff hist −50 BioMuta pipeline README →Genomic Liftover Notes
- 21:3321:33, 9 October 2024 diff hist +554 N Common fields for VCF files Created page with " {| class="wikitable" ! Field ! Description |- | Chrom | chromosome that the variation is being called on |- | Pos | base position of the variant |- | ID | identifier of the variant |- | Ref | reference base at the position of variance |- | Alt | alternate alleles at the position |- | Qual | quality score of the given alleles |- | Filter | indicates which set of filters failed or passed |- | Info | descriptions of the variation |- | Format | (optional) fields describing..." current
- 21:3221:32, 9 October 2024 diff hist +5,004 BioMuta pipeline README →Usage
- 21:2321:23, 9 October 2024 diff hist +2,945 N Additional Notes Created page with "=== Additional Notes === All the mapping files are available in the scripts repository in the folder: `pipeline/convert_step2/mapping` The mapping files used for converting the COSMIC tsv are: '''DOID:''' * `cosmic_doid_mapping.csv` COSMIC tissue site terms were mapped to DOID parent terms using the following table (generated from previous Biomuta mapping): {| class="wikitable" ! Primary Site ! Top_Level_Organ_system |- | NS | NA |- | adrenal_gland | DOID:3953 / adre..."
- 21:2121:21, 9 October 2024 diff hist +22 BioMuta pipeline README →Usage
- 21:1921:19, 9 October 2024 diff hist +1,262 BioMuta pipeline README →Usage
- 21:0921:09, 9 October 2024 diff hist +5,372 Additional notes No edit summary current
- 21:0421:04, 9 October 2024 diff hist +16 N Additional notes Created page with "Additional notes"
- 21:0321:03, 9 October 2024 diff hist +22 BioMuta pipeline README →Usage
- 20:2520:25, 9 October 2024 diff hist −7 BioMuta pipeline README →Usage
- 20:2420:24, 9 October 2024 diff hist +4 BioMuta pipeline README →Example Line Transformation
- 20:2420:24, 9 October 2024 diff hist +3 BioMuta pipeline README →Example Line Transformation
- 20:2320:23, 9 October 2024 diff hist +3,565 BioMuta pipeline README →Convert: TCGA
- 15:3515:35, 9 October 2024 diff hist −326 BioMuta pipeline README →Additional Notes
- 15:2215:22, 9 October 2024 diff hist +2,796 BioMuta pipeline README →Usage
- 15:1115:11, 9 October 2024 diff hist +1,234 BioMuta pipeline README →Step 2: Convert
- 15:0415:04, 9 October 2024 diff hist +174 BioMuta pipeline README →Pipeline Overview
- 15:0215:02, 9 October 2024 diff hist +1,280 BioMuta pipeline README →Download: COSMIC
7 October 2024
- 13:5813:58, 7 October 2024 diff hist +881 N GW-FEAST Created page with "GW-FEAST Project The GW Federated Ecosystems for Analytics and Standardized Technologies (GW-FEAST) project is part of the ARPA-H FEAST performer team initiative that includes academic and industry partners. The goal of the ARPA-H performer teams is “to create bridges across data silos to make health data more accessible and usable”. ARPA-H FEAST offers two major innovations for digital healthcare ecosystems addressing current challenges. 1) Agnostic federation ac..."
2 October 2024
- 16:2316:23, 2 October 2024 diff hist +99 m BioMuta pipeline README Added sharepoint link
1 October 2024
- 14:1114:11, 1 October 2024 diff hist +1,675 BioMuta pipeline README Download: TCGA
30 September 2024
- 23:3823:38, 30 September 2024 diff hist +1,184 N TCGA Additional Information Initial edit current
- 23:1023:10, 30 September 2024 diff hist +1,658 N List of TCGA studies Initial edit current
- 21:3321:33, 30 September 2024 diff hist +1,636 BioMuta pipeline README Download: TCGA
- 21:2521:25, 30 September 2024 diff hist −1 m Template:Inline-code debugging current
- 21:2521:25, 30 September 2024 diff hist −9 m Template:Inline-code fixed code
- 21:2421:24, 30 September 2024 diff hist +50 Template:Inline-code Included documentation
- 21:2121:21, 30 September 2024 diff hist −40 m Template:Documentation debugging current
- 21:1721:17, 30 September 2024 diff hist −25 m Template:Documentation troubleshooting
- 21:0921:09, 30 September 2024 diff hist +2 m Template:Documentation Trying to get it to work
- 21:0821:08, 30 September 2024 diff hist +116 N Template:Inline-code/doc Initial edit current
- 21:0321:03, 30 September 2024 diff hist +80 m Template:Documentation Trying to fix the code
- 21:0021:00, 30 September 2024 diff hist +8 N Template:Documentation Initial edit
- 20:5720:57, 30 September 2024 diff hist −118 Template:Inline-code Removed usage because it has to be on a separate page in order to not break the template Tag: Manual revert
- 20:5520:55, 30 September 2024 diff hist +118 Template:Inline-code Usage Tag: Reverted
- 20:5120:51, 30 September 2024 diff hist −4 m Template:Inline-code Fixed unnecessary new lines
- 20:4620:46, 30 September 2024 diff hist +132 N Template:Inline-code Initial edit
- 15:5615:56, 30 September 2024 diff hist +371 BioMuta pipeline README Download: TCGA
27 September 2024
- 19:4919:49, 27 September 2024 diff hist +2,025 N BioMuta pipeline README Initial edit
- 19:4819:48, 27 September 2024 diff hist 0 m Template:Under construction Changed width current
- 19:3619:36, 27 September 2024 diff hist +36 m Template:Under construction Changed custom message font size
- 19:3019:30, 27 September 2024 diff hist +21 Template:Under construction Added "custom message" parameter
- 19:2719:27, 27 September 2024 diff hist +171 Template:Under construction Added a box
- 18:5618:56, 27 September 2024 diff hist +82 N Template:Under construction Initial edit