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Combined display of all available logs of HIVE Lab. You can narrow down the view by selecting a log type, the username (case-sensitive), or the affected page (also case-sensitive).

• 15:33, 12 November 2024 User account Emily.pennington talk contribs was created by Hivelabwikiadmin talk contribs and password was sent by email (To maintain Wiki page)
• 17:48, 8 November 2024 User account Mazumder talk contribs was created by Hivelabwikiadmin talk contribs (To maintain Wiki page)
• 20:38, 25 October 2024 User account Vishal.bakshi talk contribs was created by Hivelabwikiadmin talk contribs (To maintain Wiki page)
• 14:25, 25 October 2024 Skim658 talk contribs created page User:Skim658 (Created page with "Sean Kim")
• 14:22, 25 October 2024 User account Skim658 talk contribs was created by Hivelabwikiadmin talk contribs
• 14:12, 25 October 2024 User account SeanKim talk contribs was created by Hivelabwikiadmin talk contribs and password was sent by email
• 14:10, 25 October 2024 User account MazumderLab talk contribs was created by Hivelabwikiadmin talk contribs and password was sent by email
• 14:09, 25 October 2024 User account VishalBakshi talk contribs was created by Hivelabwikiadmin talk contribs and password was sent by email
• 14:08, 25 October 2024 User account RajaMazumder talk contribs was created by Hivelabwikiadmin talk contribs and password was sent by email
• 14:42, 17 October 2024 Hivelabwikiadmin talk contribs created page Major updates to the BioXpress from the previous version (v-4.0) (Created page with "== Tumor Samples Added for Each Tissue == {| class="wikitable" ! Tissue !! TCGA Studies !! New Samples |- | Bladder || BLCA || 126 |- | Breast || BRCA || 159 |- | Colorectal || COAD/READ || 159 (141/18) |- | Esophageal || ESCA || 25 |- | Head and Neck || HNSC || 118 |- | Kidney || KICH/KIRP/KIRC || 289 (15/82/192) |- | Liver || LIHC || 169 |- | Lung || LUAD/LUSC || 264 (174/90) |- | Prostate || PRAD || 116 |- | Stomach || STAD || 22 |- | Thyroid || THCA || 176 |- | Uteri...")
• 14:59, 16 October 2024 Hivelabwikiadmin talk contribs created page BioXpress pipeline README (Created page with "hi")
• 22:47, 9 October 2024 Hivelabwikiadmin talk contribs created page Additional Notes - tcga (Created page with "=== Additional Notes === All the mapping files are available in the repository folder: `pipeline/convert_step2/mapping` The mapping files used for converting TCGA are: '''DOID:''' * `tcga_doid_mapping.csv` TCGA Projects were mapped to DOID parent terms using the following table (generated from previous Biomuta mapping): {| class="wikitable" ! DO_slim_id ! DO_slim_name ! TCGA_project |- | DOID:5041 | esophageal cancer | TCGA-ESCA |- | DOID:2531 | hematologic cancer |...")
• 22:06, 9 October 2024 Hivelabwikiadmin talk contribs created page Additional notes- CIVIC (Created page with "=== Additional Notes === All the mapping files are available in the scripts repository in the folder: `pipeline/convert_step2/mapping` The mapping files used for converting CIVIC are: '''DOID:''' * `tcga_doid_mapping.csv` CIVIC DOID child terms were mapped to DOID parent terms using the following table (generated from the OncoMX DOID mapping table): {| class="wikitable" ! CIVIC Entity Disease |- | Acral_Lentiginous_Melanoma_(DOID_6367) |- | Acute_Lymphoblastic_Leukem...")
• 22:02, 9 October 2024 Hivelabwikiadmin talk contribs created page Additional Notes for COSMIC (Created page with "=== Additional Notes === All the mapping files are available in the scripts repository in the folder: `pipeline/convert_step2/mapping` The mapping files used for converting the COSMIC tsv are: '''DOID:''' * `cosmic_doid_mapping.csv` COSMIC tissue site terms were mapped to DOID parent terms using the following table (generated from previous Biomuta mapping): {| class="wikitable" ! Primary Site ! Top_Level_Organ_system |- | NS | NA |- | adrenal_gland | DOID:3953 / adre...")
• 21:56, 9 October 2024 Hivelabwikiadmin talk contribs created page Final Fields (Created page with "=== Additional Notes === ==== Final fields ==== {| class="wikitable" ! Field ! Description |- | sample_name | Sample ID provided by the original resource (for v-5.0 only applies to TCGA and COSMIC) |- | chr_id | Chromosome number only (no ‘chr’) |- | start_pos | Genomic coordinates (For v-5.0 these are all with ref GRCh38) |- | end_pos | Identical to the start position because all mutations are Specifications |- | ref_nt | Reference nucleotide |- | alt_nt | Nucleot...")
• 21:33, 9 October 2024 Hivelabwikiadmin talk contribs created page Common fields for VCF files (Created page with " {| class="wikitable" ! Field ! Description |- | Chrom | chromosome that the variation is being called on |- | Pos | base position of the variant |- | ID | identifier of the variant |- | Ref | reference base at the position of variance |- | Alt | alternate alleles at the position |- | Qual | quality score of the given alleles |- | Filter | indicates which set of filters failed or passed |- | Info | descriptions of the variation |- | Format | (optional) fields describing...")
• 21:23, 9 October 2024 Hivelabwikiadmin talk contribs created page Additional Notes (Created page with "=== Additional Notes === All the mapping files are available in the scripts repository in the folder: `pipeline/convert_step2/mapping` The mapping files used for converting the COSMIC tsv are: '''DOID:''' * `cosmic_doid_mapping.csv` COSMIC tissue site terms were mapped to DOID parent terms using the following table (generated from previous Biomuta mapping): {| class="wikitable" ! Primary Site ! Top_Level_Organ_system |- | NS | NA |- | adrenal_gland | DOID:3953 / adre...")
• 21:04, 9 October 2024 Hivelabwikiadmin talk contribs created page Additional notes (Created page with "Additional notes")
• 13:58, 7 October 2024 Hivelabwikiadmin talk contribs created page FEAST-ARPA-H (Created page with "GW-FEAST Project The GW Federated Ecosystems for Analytics and Standardized Technologies (GW-FEAST) project is part of the ARPA-H FEAST performer team initiative that includes academic and industry partners. The goal of the ARPA-H performer teams is “to create bridges across data silos to make health data more accessible and usable”. ARPA-H FEAST offers two major innovations for digital healthcare ecosystems addressing current challenges. 1) Agnostic federation ac...")
• 23:38, 30 September 2024 Hivelabwikiadmin talk contribs created page TCGA Additional Information (Initial edit)
• 23:10, 30 September 2024 Hivelabwikiadmin talk contribs created page List of TCGA studies (Initial edit)
• 21:08, 30 September 2024 Hivelabwikiadmin talk contribs created page Template:Inline-code/doc (Initial edit)
• 21:07, 30 September 2024 Hivelabwikiadmin talk contribs deleted page Template:Inline code/doc (Broken redirect: content was: "<!-- Example usage --> <p>To use this template, type:</p> <pre>{{<nowiki>Inline-code</nowiki>|your text here}}</pre>", and the only contributor was "Hivelabwikiadmin" (talk))
• 21:00, 30 September 2024 Hivelabwikiadmin talk contribs created page Template:Documentation (Initial edit)
• 20:57, 30 September 2024 Hivelabwikiadmin talk contribs created page Template:Inline code/doc (Initial edit)
• 20:46, 30 September 2024 Hivelabwikiadmin talk contribs created page Template:Inline-code (Initial edit)
• 19:49, 27 September 2024 Hivelabwikiadmin talk contribs created page BioMuta pipeline README (Initial edit)
• 18:56, 27 September 2024 Hivelabwikiadmin talk contribs created page Template:Under construction (Initial edit)
• 17:11, 25 September 2024 MediaWiki default talk contribs created page Main Page