Common fields for VCF files

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Revision as of 21:33, 9 October 2024 by Hivelabwikiadmin (talk | contribs) (Created page with " {| class="wikitable" ! Field ! Description |- | Chrom | chromosome that the variation is being called on |- | Pos | base position of the variant |- | ID | identifier of the variant |- | Ref | reference base at the position of variance |- | Alt | alternate alleles at the position |- | Qual | quality score of the given alleles |- | Filter | indicates which set of filters failed or passed |- | Info | descriptions of the variation |- | Format | (optional) fields describing...")
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Field Description
Chrom chromosome that the variation is being called on
Pos base position of the variant
ID identifier of the variant
Ref reference base at the position of variance
Alt alternate alleles at the position
Qual quality score of the given alleles
Filter indicates which set of filters failed or passed
Info descriptions of the variation
Format (optional) fields describing the sample
Samples values for each of the samples listed under format
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