Main Page: Difference between revisions

From HIVE Lab
Jump to navigation Jump to search
mNo edit summary
No edit summary
(25 intermediate revisions by 3 users not shown)
Line 1: Line 1:
<div style="border: 1px solid #ccc; padding: 10px; background-color: #f9f9f9; border-radius: 5px; text-align: center">
{{DISPLAYTITLE:<span style="position: absolute; clip: rect(1px 1px 1px 1px); clip: rect(1px, 1px, 1px, 1px);">{{FULLPAGENAME}}</span>}}
'''Welcome to HIVE LAB wiki'''
__NOTOC__
<!-- BANNER ACROSS TOP OF PAGE -->
<div style="font-size:290%; padding:.1em; text-align: center;">Welcome to the HIVE Lab (Mazumder Research Group) Wiki</div><br>
{| style="width:100%;"
| [[File:Intro_HIVE_Lab.png|950px|center]]
| align="right" | [https://www.linkedin.com/company/glygen/ [[File:Linkedin.png|40px|link=]]]
|}
<div id="ggw-topbanner" style="clear:both; position:relative; box-sizing:border-box; width:100%; margin:1.2em 0 6px; min-width:47em; border:1px solid #ddd; background-color:#f9f9f9; color:#000;">
    <div style="margin:0.4em; text-align:left;">
        <div style="font-size:100%;">The HIVE Lab group is involved in developing the High-performance Integrated Virtual Environment (HIVE) which is a collaborative project between the CBER Food and Drug Administration (FDA) and Dr. Raja Mazumder's team at The George Washington University (GW). This effort aims to integrate various high throughput data analysis tools into the HIVE platform.
In addition to the HIVE platform, the group is involved in developing standards for bioinformatics communication via BioCompute Objects, knowledgebases for glycoinformatics (GlyGen), cancer research (BiomarkerKB, OncoMX, BioMuta, BioXpress), and microbiome analysis via the GutFeeling Knowledge Base (GFKB). The lab leverages knowledge graphs and advanced ML/AI technologies, including large language models, to harmonize, map, and uncover valuable insights from clinical data, omics datasets, knowledgebases, and scientific publications.</div><br>
        <div style="font-size:100%;">This wiki system provides complementary information to the [https://hivelab.biochemistry.gwu.edu/ HIVE Lab] and is divided into the following main sections:</div>
    </div>
</div>
<div style="clear: both;"></div>
<div style="clear: both;"><br />
        <div style="border-top: 1px solid #CCC; padding-top: 0.5em;"><div id="ggw_row3" style="display: flex; flex-flow: row wrap; justify-content: space-between; padding: 0; margin: 0 -5px 0 -5px;">
    <div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
        <h3>[[Projects]]</h3>
        <div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
&nbsp;&nbsp;&nbsp;&nbsp;'''''Main article:''' [[Projects]]''<br>HIVE team projects fall into two major categories:<br>
1) Developing infrastructure for biomedical data analysis.<br>
2) Using that infrastructure to integrate and mine the data for knowledge.<br />
</div>
    </div>
</div>
</div>
<div style="clear: both;">
        <div style="border-top: 1px solid #CCC; padding-top: 0.5em;"><div id="ggw_row3" style="display: flex; flex-flow: row wrap; justify-content: space-between; padding: 0; margin: 0 -5px 0 -5px;">
    <div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
        <h3>[[Publications]]</h3>
        <div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
&nbsp;&nbsp;&nbsp;&nbsp;'''''Main article:''' [[Publications]]''<br>The HIVE team has a variety of peer-reviewed publications, book chapters, posters, brochures, and multimedia available for the public.<br />
</div>
    </div>
</div>
</div>
<div style="clear: both;">
        <div style="border-top: 1px solid #CCC; padding-top: 0.5em;"><div id="ggw_row3" style="display: flex; flex-flow: row wrap; justify-content: space-between; padding: 0; margin: 0 -5px 0 -5px;">
    <div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
        <h3>[[People]]</h3>
        <div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
&nbsp;&nbsp;&nbsp;&nbsp;'''''Main article:''' [[People]]''<br>This page contains details about the HIVE Lab team.<br />
</div>
    </div>
</div>
</div>
<div style="clear: both;">
        <div style="border-top: 1px solid #CCC; padding-top: 0.5em;"><div id="ggw_row3" style="display: flex; flex-flow: row wrap; justify-content: space-between; padding: 0; margin: 0 -5px 0 -5px;">
    <div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
        <h3>[[Tool Resources]]</h3>
        <div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
&nbsp;&nbsp;&nbsp;&nbsp;'''''Main article:''' [[Tool Resources]]''<br>There are a variety of bioinformatic tool resources developed by our team.
<br />
</div>
    </div>
</div>
</div>
<div style="clear: both;">
        <div style="border-top: 1px solid #CCC; padding-top: 0.5em;"><div id="ggw_row3" style="display: flex; flex-flow: row wrap; justify-content: space-between; padding: 0; margin: 0 -5px 0 -5px;">
    <div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
        <h3>[[Dataset Resources]]</h3>
        <div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
&nbsp;&nbsp;&nbsp;&nbsp;'''''Main article:''' [[Dataset Resources]]''<br>There are a variety of bioinformatic dataset resources integrated by our team.
</div>
    </div>
</div>
</div>
<div style="clear: both;">
        <div style="border-top: 1px solid #CCC; padding-top: 0.5em;"><div id="ggw_row3" style="display: flex; flex-flow: row wrap; justify-content: space-between; padding: 0; margin: 0 -5px 0 -5px;">
    <div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
        <h3>[[Opportunities]]</h3>
        <div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
&nbsp;&nbsp;&nbsp;&nbsp;'''''Main article:''' [[Opportunities]]''<br>Interested in joining our team? Learn about our team.
<br />
</div>
    </div>
</div>
</div>
<div style="border: 1px solid #ccc; padding: 10px; background-color: #f9f9f9; border-radius: 5px;">
The [https://hivelab.biochemistry.gwu.edu/ HIVE LAB wiki] provides information and links to resources developed by our group. Here are some key sections.
</div>
</div>
 
<div style="clear: both;">
<div style="border: 1px solid #ccc; padding: 10px; background-color: #f9f9f9; border-radius: 5px;">
        <div style="border-top: 1px solid #CCC; padding-top: 0.5em;"><div id="ggw_row3" style="display: flex; flex-flow: row wrap; justify-content: space-between; padding: 0; margin: 0 -5px 0 -5px;">
[https://hivelab.biochemistry.gwu.edu/projects Projects]
    <div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
        <h3>[[Gallery]]</h3>
        <div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
&nbsp;&nbsp;&nbsp;&nbsp;'''''Main article:''' [[Gallery]]''<br>Interested in joining our team? Learn about our team.
<br />
</div>
</div>
 
    </div>
<div style="border: 1px solid #ccc; padding: 10px; background-color: #f9f9f9; border-radius: 5px;">
[https://hivelab.biochemistry.gwu.edu/publications Publications]
</div>
</div>
<div style="border: 1px solid #ccc; padding: 10px; background-color: #f9f9f9; border-radius: 5px;">
[https://hivelab.biochemistry.gwu.edu/people People]
</div>
</div>


<div style="border: 1px solid #ccc; padding: 10px; background-color: #f9f9f9; border-radius: 5px;">
=External links=
'''Resources'''
* [https://hivelab.biochemistry.gwu.edu/tools Tools]
* [https://hivelab.biochemistry.gwu.edu/datasets Datasets]
</div>


<div style="border: 1px solid #ccc; padding: 10px; background-color: #f9f9f9; border-radius: 5px;">
;Official
[https://hivelab.biochemistry.gwu.edu/gallery Gallery]
</div>


<div style="border: 1px solid #ccc; padding: 10px; background-color: #f9f9f9; border-radius: 5px;">
*[https://hivelab.biochemistry.gwu.edu/ HIVE Lab official website]
'''More'''
* [https://hivelab.biochemistry.gwu.edu/opportunities Opportunities]
* [https://hivelab.biochemistry.gwu.edu/events Events]
</div>

Revision as of 23:14, 25 November 2024


Welcome to the HIVE Lab (Mazumder Research Group) Wiki


The HIVE Lab group is involved in developing the High-performance Integrated Virtual Environment (HIVE) which is a collaborative project between the CBER Food and Drug Administration (FDA) and Dr. Raja Mazumder's team at The George Washington University (GW). This effort aims to integrate various high throughput data analysis tools into the HIVE platform. In addition to the HIVE platform, the group is involved in developing standards for bioinformatics communication via BioCompute Objects, knowledgebases for glycoinformatics (GlyGen), cancer research (BiomarkerKB, OncoMX, BioMuta, BioXpress), and microbiome analysis via the GutFeeling Knowledge Base (GFKB). The lab leverages knowledge graphs and advanced ML/AI technologies, including large language models, to harmonize, map, and uncover valuable insights from clinical data, omics datasets, knowledgebases, and scientific publications.

This wiki system provides complementary information to the HIVE Lab and is divided into the following main sections:

Projects

    Main article: Projects
HIVE team projects fall into two major categories:
1) Developing infrastructure for biomedical data analysis.
2) Using that infrastructure to integrate and mine the data for knowledge.

Publications

    Main article: Publications
The HIVE team has a variety of peer-reviewed publications, book chapters, posters, brochures, and multimedia available for the public.

People

    Main article: People
This page contains details about the HIVE Lab team.

Tool Resources

    Main article: Tool Resources
There are a variety of bioinformatic tool resources developed by our team.

Dataset Resources

    Main article: Dataset Resources
There are a variety of bioinformatic dataset resources integrated by our team.

Opportunities

    Main article: Opportunities
Interested in joining our team? Learn about our team.

Gallery

    Main article: Gallery
Interested in joining our team? Learn about our team.

External links

Official